Gene omics information

Query gene ID	Zm.3996.1.S1_at
Gene name	hypothetical protein LOC100274383
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.3996.1.S1_at	CD436900	hypothetical protein LOC100274383	-	2e-11	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	S.X.	H.G.	Please select
0.71	88.2	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	S.X.	H.G.	Please select
0.57	75.1	Zm.17849.1.A1_at	AY110409.1	Hypothetical protein LOC100192672	-	1e-71	At1g10950	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.53	69.1	Zm.15421.1.S1_at	AY107122.1	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	S.X.	H.G.	Please select
0.48	61.3	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	S.X.	H.G.	Please select
0.41	49.7	Zm.19357.1.A1_at	CO533449	pre-mRNA cleavage complex II protein Clp1	-	2e+0	At2g38465	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.33	36.0	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	97.6	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.8	96.6	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	7e-15	81	Zm.6307.1.A1_at	AI691328	-	-	7e-32	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.13	4e-13	75	Zm.12513.1.A1_at	AW000088	hypothetical protein LOC100274471	-	4e-32	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.02	4e-4	46	Zm.8538.1.S1_at	AW067375	hypothetical protein LOC100278938	-	5e-13	At3g23690	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	6e-3	42	Zm.6741.1.A1_at	AI396113	hypothetical protein LOC100275507	-	6e+0	At5g60330	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.4253.1.A1_at	BM266771	hypothetical protein LOC100277148	-	4e-2	At5g64240	AtMC3 (metacaspase 3)	C.G.	S.X.	Please select
0.02	9e-2	38	Zm.8490.1.A1_at	CB351020	hypothetical protein LOC100277467	-	4e+0	At2g23290	AtMYB70 (myb domain protein 70)	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.598.1.A1_at	AF332375.1	lethal embryo mutant1	-	3e-2	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.13728.1.S1_at	AF332172.1	alpha-expansin 4	-	2e-19	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.02	4e-1	36	ZmAffx.656.1.A1_at	AI715084	-	-	8e-1	At5g57310	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	2e-11	71	Arabidopsis thaliana	At2g39770	818562	CYT1 (CYTOKINESIS DEFECTIVE 1)	Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis. Mutations in this gene confer hypersensitivity to NH4+.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	5e-12	73	Glycine max	PsAffx.C44000016_at	PsAffx.C44000016	-	-	8e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	C.G.	S.X.	Please select
0.59	0	1273	Hordeum vulgare	Contig7203_at	Contig7203	-	-	2e-7	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.61	0	1340	Oryza sativa	Os03g0268400	AK121972.1	-	Mannose-1-phosphate guanyltransferase (EC2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase)(GDP-mannose pyrophosphorylase) (NDP- hexosepyrophosphorylase)	3e-28	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-6	56	Populus trichocarpa	Ptp.615.1.S1_s_at	CV255021	hypothetical protein	-	3e-80	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	0	1263	Triticum aestivum	Ta.6794.1.S1_x_at	CK198171	-	-	7e-17	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.10	2e-23	109	Vitis vinifera	1622606_at	CB910226	GDP-D-mannose pyrophosphorylase	-	4e-157	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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