CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3994.1.S1_at

Gene name pyruvate decarboxylase3

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.3994.1.S1_at AF370005.1 pyruvate decarboxylase3 - 2e-14 At5g01320 pyruvate decarboxylase, putative S.X. H.G.
0.44 55.7 Zm.7282.1.A1_at AB016810.1 ferredoxin2 - 3e-2 At1g10960 ATFD1 (FERREDOXIN 1) S.X. H.G.
0.40 48.5 Zm.7463.1.A1_at BM078503 hypothetical protein LOC100276250 - 2e+0 At1g21090 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.22 16.9 Zm.6228.1.A1_at AI739920 - - 1e+0 At1g64370 unknown protein S.X. H.G.
0.21 15.5 Zm.17516.1.S1_at CF623514 hypothetical protein LOC100216611 - 3e-12 At5g63650 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) S.X. H.G.
0.08 3.4 Zm.5429.1.A1_at AW066738 BSD domain containing protein - 5e+0 At5g56710 60S ribosomal protein L31 (RPL31C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.5 98.3 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.5 98.1 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.0 98.0 GSM162265 Wild type 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.0 98.0 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.1 97.4 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.1 97.4 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.0 97.3 GSM202322 B73x Mo17 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.7 97.2 GSM206333 Lower pulvinus 30 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.5 97.1 GSM202320 B73 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.5 97.1 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-56 220 Zm.10317.1.S1_at AF370003.1 pyruvate decarboxylase - 6e-33 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
0.25 2e-53 210 Zm.14518.1.A1_at CD434065 pyruvate decarboxylase - 6e-28 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
0.25 2e-53 210 Zm.14518.1.S1_at CD434065 pyruvate decarboxylase - 6e-28 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
0.25 2e-53 210 Zm.14518.1.S1_s_at CD434065 pyruvate decarboxylase /// pyruvate decarboxylase - 6e-28 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
0.06 2e-16 87 Zm.166.2.S1_at AI664966 Pyruvate decarboxylase1 - 3e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.06 2e-16 87 Zm.166.2.A1_a_at AI664966 pyruvate decarboxylase1 - 3e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.02 3e-2 40 Zm.18371.1.A1_at CF631027 hypothetical protein LOC100191481 - 2e-2 At3g18180 transferase, transferring glycosyl groups C.G. S.X.
0.01 1e-1 38 Zm.3791.1.A1_at AW224984 - - 8e-1 At1g56030 MIF4G domain-containing protein / U-box domain-containing protein C.G. S.X.
0.01 5e-1 36 Zm.4630.2.A1_at CK347497 hypothetical protein LOC100273246 - 8e-7 At1g12840 DET3 (DE-ETIOLATED 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 2e-14 81 Arabidopsis thaliana At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV - - - C.G. S.X.
0.24 1e-16 89 Glycine max Gma.11273.1.S1_s_at CD396662 - - 2e-66 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
0.66 0 1526 Hordeum vulgare Contig2867_at Contig2867 - - 8e-14 At5g01320 pyruvate decarboxylase, putative C.G. S.X.
0.68 0 1707 Oryza sativa Os03g0293500 AK119500.1 - Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1)(PDC) (Fragment) 2e-24 At5g01320 pyruvate decarboxylase, putative C.G. S.X.
0.27 1e-44 182 Populus trichocarpa PtpAffx.3704.1.S1_at CV254514 hypothetical protein - 4e-64 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
0.64 0 1661 Triticum aestivum Ta.19423.1.S1_a_at CD934753 - - 2e-36 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
0.27 2e-42 173 Vitis vinifera 1609684_at CB009168 similar to pyruvate decarboxylase - 3e-41 At5g54960 PDC2 (pyruvate decarboxylase-2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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