Gene omics information

Query gene ID	Zm.3982.1.A1_at
Gene name	50S ribosomal protein L21
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.3982.1.A1_at	AW146684	50S ribosomal protein L21	-	2e-3	At1g35680	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	S.X.	H.G.	Please select
0.61	79.5	Zm.343.1.S1_at	CB603836	outer cell layer2	-	6e-3	At4g00730	ANL2 (ANTHOCYANINLESS 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.9675.1.A1_at	BM335265	chitinase 2	-	5e+0	At1g62250	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	S.X.	H.G.	Please select
0.29	28.1	Zm.7976.1.S1_at	BM080696	hypothetical protein LOC100217261	-	2e-46	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	S.X.	H.G.	Please select
0.22	16.9	Zm.15576.1.A1_a_at	CK827910	-	-	3e-1	At5g01860	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	97.2	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.1	96.8	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
4.5	96.3	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.4	96.2	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.3	96.1	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.3	96.1	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.1	95.9	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	38	ZmAffx.1394.1.S1_at	40794996-69	-	-	2e-1	At5g46013	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.9642.1.A1_at	BM338826	-	-	3e-1	At2g17940	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.8990.1.A1_at	CF634396	hypothetical protein LOC100217040	-	1e-33	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.15884.1.A1_at	BM498962	auxin induced protein	-	1e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10394.1.S1_at	BQ163241	hypothetical protein LOC100276017	-	5e-3	At1g16810	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	34	ZmAffx.794.1.S1_at	AI770336	-	-	8e-1	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.04	8e-1	34	ZmAffx.794.1.A1_at	AI770336	-	-	8e-1	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.2788.1.S1_at	CO520019	hypothetical protein LOC100192469	-	4e-3	At3g54140	PTR1 (PEPTIDE TRANSPORTER 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-3	44	Arabidopsis thaliana	At1g35680	840472	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	PsAffx.psMA009xC22f_at	PsAffx.psMA009xC22f	-	-	7e-2	At5g44080	bZIP transcription factor family protein	C.G.	S.X.	Please select
0.39	6e-116	416	Hordeum vulgare	Contig3960_at	Contig3960	-	-	2e-3	At1g35680	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	C.G.	S.X.	Please select
0.41	2e-140	500	Oryza sativa	Os02g0259600	AK062182.1	-	50S ribosomal protein L21, chloroplast precursor(CL21) (CS-L7)	2e-3	At1g35680	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-2	42	Populus trichocarpa	PtpAffx.249.290.S1_at	CV279684	hypothetical protein	-	7e-3	At1g35680	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	5e-115	414	Triticum aestivum	Ta.730.1.S1_at	BJ287118	-	-	4e-2	At1g35680	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	C.G.	S.X.	Please select
0.09	9e-3	40	Vitis vinifera	1613550_at	CF519120	hypothetical protein LOC100255002	-	1e-1	At5g19240	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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