Gene omics information

Query gene ID	Zm.3952.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	48.5	Zm.3952.1.S1_at	AW155692	-	-	1e-4	At2g19950	GC1 (Golgin Candidate 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.6635.1.A1_at	AI491332	-	-	6e-9	At1g34260	phosphatidylinositol-4-phosphate 5-kinase family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.3219.3.A1_at	AY109877.1	-	-	2e-119	At2g29630	THIC (ThiaminC)	S.X.	H.G.	Please select
0.50	65.7	Zm.3855.1.S1_at	AA979788	-	-	2e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	S.X.	H.G.	Please select
0.48	61.3	Zm.17498.1.A1_at	CK144816	hypothetical protein LOC100279562	-	1e+0	At5g62430	CDF1 (CYCLING DOF FACTOR 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.6024.1.A1_at	AW066865	-	-	2e+0	At5g18500	protein kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-1	34	Zm.7015.1.S1_at	CO522815	-	-	5e-8	At5g46030	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.573.1.A1_at	AF131201.1	plasma membrane MIP protein	-	3e-37	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.16315.1.S1_a_at	AF326488.1	plasma membrane integral protein ZmPIP1-3	-	3e-24	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.16315.2.A1_at	AY103580.1	Plasma membrane integral protein ZmPIP1-3	-	6e-14	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.16315.1.S1_x_at	AF326488.1	plasma membrane integral protein ZmPIP1-3	-	3e-24	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.1085.1.A1_at	AW018111	zinc finger, C3HC4 type family protein	-	3e+0	At1g67035	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.1085.1.S1_at	AW018111	-	-	3e+0	At1g67035	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.958.1.S1_at	AY109128.1	hypothetical protein LOC100279983	-	6e-8	At5g02150	binding	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7740.1.A1_at	BM079714	hypothetical protein LOC100193967	-	3e-2	At1g45249	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-4	48	Arabidopsis thaliana	At2g19950	816514	GC1 (Golgin Candidate 1)	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC1 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (558-715 aa) portion of the protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	GmaAffx.82036.1.S1_at	BI317507	-	-	2e-1	At2g19440	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.25	6e-42	171	Hordeum vulgare	Contig20583_s_at	Contig20583	-	-	4e+0	At2g38630	-	C.G.	S.X.	Please select
0.32	1e-138	494	Oryza sativa	Os01g0744400	AK067648.1	-	Tropomyosin family protein	3e-4	At2g19950	GC1 (Golgin Candidate 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	2e-13	77	Populus trichocarpa	PtpAffx.218695.1.S1_at	pmrna34405	hypothetical protein	-	8e-37	At2g19950	GC1 (Golgin Candidate 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	6e-158	557	Triticum aestivum	Ta.11514.1.S1_at	CD865567	-	-	2e-11	At2g19950	GC1 (Golgin Candidate 1)	C.G.	S.X.	Please select
0.06	6e-7	54	Vitis vinifera	1611992_at	CB976197	hypothetical protein LOC100255916	-	8e-43	At2g19950	GC1 (Golgin Candidate 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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