Gene omics information

Query gene ID	Zm.3930.1.S1_at
Gene name	AMP-binding protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.3930.1.S1_at	BQ538158	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	S.X.	H.G.	Please select
0.67	85.8	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	S.X.	H.G.	Please select
0.56	74.4	Zm.9285.1.A1_at	BM339972	disease resistance response protein 206	-	6e+0	At5g46874	-	S.X.	H.G.	Please select
0.50	65.7	Zm.8612.1.A1_at	BM074907	hypothetical protein LOC100278970	-	6e+0	At3g27380	SDH2-1	S.X.	H.G.	Please select
0.44	55.7	Zm.2012.1.S1_at	AW566063	-	-	8e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	S.X.	H.G.	Please select
0.35	38.9	Zm.8846.1.A1_at	BM337343	-	-	4e+0	At3g29250	copper ion binding / oxidoreductase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.0	96.7	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.9	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.9	96.7	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.8	96.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.4	96.2	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1822	Zm.3930.1.S1_s_at	BQ538158	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	C.G.	S.X.	Please select
0.47	0	1120	Zm.3042.1.A1_at	AY109410.1	-	-	3e-32	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	C.G.	S.X.	Please select
0.50	0	1120	Zm.3042.1.S1_at	AY109410.1	-	-	6e-21	At5g27600	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	C.G.	S.X.	Please select
0.03	9e-1	34	ZmAffx.1492.1.S1_at	11990232-49	-	-	2e-31	Atcg00710	-	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.4251.1.S1_at	CF625068	Protein disulfide isomerase	-	1e-12	At1g04980	ATPDIL2-2 (PDI-LIKE 2-2)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.3461.1.A1_a_at	BU197756	RuBisCo subunit binding-protein beta subunit	-	1e-19	At3g13470	chaperonin, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.3461.1.A1_at	BU197756	-	-	1e-19	At3g13470	chaperonin, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.308.1.S1_at	AF082347.1	C13 endopeptidase NP1 precursor	-	3e-16	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.2751.1.A1_at	AI834656	hypothetical protein LOC100191655	-	5e+0	At3g53630	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	8e-37	155	Arabidopsis thaliana	At3g05970	819767	LACS6 (long-chain acyl-CoA synthetase 6)	encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-6	54	Glycine max	Gma.7613.1.S1_at	BG508937	-	-	9e-24	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	C.G.	S.X.	Please select
0.45	1e-123	442	Hordeum vulgare	Contig6771_s_at	Contig6771	-	-	2e-25	At5g27600	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	C.G.	S.X.	Please select
0.31	3e-124	446	Oryza sativa	Os12g0143900	AK065216.1	-	Long chain acyl-CoA synthetase 6 (EC 6.2.1.3)	1e-19	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-26	121	Populus trichocarpa	PtpAffx.26085.1.S1_at	BU884670	hypothetical protein	-	7e-78	At5g27600	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	9e-151	533	Triticum aestivum	Ta.9051.2.S1_at	CA663328	-	-	2e-13	At5g27600	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	C.G.	S.X.	Please select
0.03	1e-2	40	Vitis vinifera	1615732_s_at	BQ797180	-	-	2e-11	At5g27600	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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