Gene omics information

Query gene ID	Zm.3919.1.S1_at
Gene name	hypothetical protein LOC100194180
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.8	Zm.3919.1.S1_at	BG840867	hypothetical protein LOC100194180	-	7e-16	At3g05280	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.15854.1.S1_at	CK370725	-	-	4e-39	At4g38620	MYB4	S.X.	H.G.	Please select
0.32	33.4	Zm.15352.3.S1_at	CF919882	hypothetical protein LOC100273764	-	5e-11	At3g12170	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.30	29.8	Zm.2769.1.S1_at	BM336917	-	-	5e-1	At3g12030	unknown protein	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.499.1.A1_at	AI691724	-	-	1e+1	At4g10910	unknown protein	S.X.	H.G.	Please select
0.22	16.9	ZmAffx.726.1.A1_at	AI739956	-	-	3e+0	At2g32360	ubiquitin family protein	S.X.	H.G.	Please select
0.21	15.5	Zm.2031.1.S1_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	S.X.	H.G.	Please select
0.14	7.7	Zm.4377.1.A1_at	BM333786	ubiquitin-conjugating enzyme E2 J2	-	7e-4	At1g17280	UBC34 (ubiquitin-conjugating enzyme 34)	S.X.	H.G.	Please select
0.10	4.6	ZmAffx.772.1.A1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	S.X.	H.G.	Please select
0.06	2.3	Zm.6026.1.S1_at	CA405322	hypothetical protein LOC100194158	-	7e-21	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	97.2	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.7	95.4	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	694	Zm.14670.1.S1_at	BM381336	hypothetical protein LOC100193527	-	8e-5	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.216.1.S1_at	AJ238787.1	MutS homolog2	-	2e-18	At3g24495	MSH7 (MUTS HOMOLOG 7)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.19099.1.S1_at	CO530975	-	-	4e+0	At2g32650	-	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.1503.2.S1_at	BG840165	hypothetical protein LOC100278602	-	6e-1	At2g45530	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.8345.1.A1_at	BM073781	hypothetical protein LOC100216718	-	6e+0	At5g63530	ATFP3	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6749.1.A1_at	BM079523	calmodulin binding protein	-	5e-8	At5g57580	calmodulin-binding protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6096.2.S1_at	AJ006545	-	-	2e-26	At2g21520	transporter	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6096.2.S1_x_at	AJ006545	-	-	2e-26	At2g21520	transporter	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5737.1.S1_at	CF626358	hypothetical protein LOC100274927	-	1e-1	At1g02710	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	7e-16	85	Arabidopsis thaliana	At3g05280	819692	integral membrane Yip1 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.70533.1.A1_at	CD407936	-	-	3e+0	Atmg00910	-	C.G.	S.X.	Please select
0.63	0	660	Hordeum vulgare	Contig9005_at	Contig9005	-	-	1e-14	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.66	0	767	Oryza sativa	Os01g0610500	AK105469.1	-	Conserved hypothetical protein	1e-14	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	8e-4	46	Populus trichocarpa	Ptp.460.1.A1_at	CK087646	hypothetical protein	-	1e-34	At5g27490	integral membrane Yip1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	3e-64	246	Triticum aestivum	Ta.7590.2.S1_a_at	CK215141	-	-	9e-8	At5g27490	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.10	4e-5	48	Vitis vinifera	1619947_at	BQ794365	hypothetical protein LOC100266603	-	5e-6	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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