Gene omics information

Query gene ID	Zm.3907.1.S1_at
Gene name	AGAMOUS-like protein /// M2 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.3907.1.S1_at	L81162.2	AGAMOUS-like protein /// M2 protein	-	3e-15	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.46	58.4	Zm.6629.1.S1_at	BQ034792	40S ribosomal protein S30	-	2e-24	At4g29390	40S ribosomal protein S30 (RPS30B)	S.X.	H.G.	Please select
0.46	58.4	Zm.12569.1.S1_at	AI065621	-	-	1e-11	At3g46960	ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding	S.X.	H.G.	Please select
0.36	41.3	Zm.385.1.A1_at	AF058763.1	Lesion22	-	1e-21	At2g40490	HEME2	S.X.	H.G.	Please select
0.32	33.4	Zm.2064.1.A1_at	CK144546	-	-	5e+0	At2g27580	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.6643.1.S1_at	BM080215	hypothetical protein LOC100278234	-	3e-2	At5g41440	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.9662.1.A1_at	CB351308	-	-	7e+0	At5g41910	RNA polymerase II mediator complex protein-related	S.X.	H.G.	Please select
0.27	24.6	Zm.13723.1.S1_at	CO527387	-	-	2e+0	At2g22201	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.6007.1.S1_at	AI666154	THUMP domain containing protein	-	3e+0	At5g54540	-	S.X.	H.G.	Please select
0.26	22.7	Zm.4397.1.S1_at	AI714503	hypothetical protein LOC100274308	-	2e+0	At5g62140	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.1	99.6	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
20.8	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	896	Zm.14826.1.A1_at	AJ430637.1	m23 protein	-	2e-16	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.61	0	896	Zm.14826.1.S1_at	AJ430637.1	m23 protein	-	2e-16	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.16	7e-85	313	Zm.133.1.S1_at	L18924.1	homologue of Arabidopsis gene AGAMOUS	-	5e-8	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.17	3e-81	301	Zm.5851.10.A1_a_at	X85336.1	ZEM3	-	2e-9	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.20	2e-76	286	Zm.5851.6.S1_x_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.17	2e-76	286	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.15	3e-75	282	Zm.5851.8.A1_a_at	X85334.1	MADS box protein	-	1e-7	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.15	3e-75	282	Zm.5851.8.A1_x_at	X85334.1	MADS box protein	-	1e-7	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.18	3e-75	282	Zm.5851.8.S1_a_at	X85334.1	ZEM3	-	1e-7	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	3e-15	83	Arabidopsis thaliana	At4g18960	827631	AG (AGAMOUS)	Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	9e-4	46	Glycine max	GmaAffx.79004.1.S1_at	BU761215	MADS-box protein	-	2e-17	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.36	7e-144	510	Hordeum vulgare	Contig11029_at	Contig11029	-	-	2e-10	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.46	2e-150	533	Oryza sativa	Os01g0201700	AY553724.1	-	MADS box protein	2e-10	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-7	57	Populus trichocarpa	PtpAffx.162863.1.S1_at	BU882965	hypothetical protein	-	1e-6	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-40	167	Triticum aestivum	TaAffx.112563.1.S1_at	CA622906	-	-	3e-1	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please select
0.18	7e-41	167	Vitis vinifera	1607973_at	CB969561	-	-	7e-4	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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