Gene omics information

Query gene ID	Zm.390.1.S1_at
Gene name	dwarf plant3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.83	95.6	Zm.3892.8.S1_a_at	CA404367	Elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.73	89.9	Zm.15524.1.A1_at	CF632238	-	-	4e-1	At5g46780	VQ motif-containing protein	S.X.	H.G.	Please select
0.63	81.1	Zm.2901.1.A1_at	BM351614	hypothetical protein LOC100277716	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	S.X.	H.G.	Please select
0.59	76.1	Zm.11783.1.A1_at	BM380733	hypothetical protein LOC100191487	-	4e+0	At5g42510	disease resistance-responsive family protein	S.X.	H.G.	Please select
0.42	51.3	Zm.2784.1.A1_at	CF629950	hypothetical protein LOC100276915	-	5e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.0	99.3	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
19.5	99.3	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
15.2	98.9	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.2	98.5	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.1	98.5	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.1	98.4	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.0	98.4	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.7	98.1	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.5	97.8	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-4	48	Zm.12789.1.A1_at	CA398899	-	-	9e-3	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.13245.1.S1_at	AF450481.1	CBF3-like protein	-	2e+0	At3g22800	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please select
0.04	3e-2	40	Zm.7780.1.A1_at	CD433445	hypothetical protein LOC100274595	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.02	3e-2	40	Zm.7780.1.S1_at	CD433445	-	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.19245.1.S1_at	CO531390	hypothetical protein LOC100272927	-	3e-46	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.19245.1.S1_s_at	CO531390	hypothetical protein LOC100272927	-	3e-46	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.13316.1.S1_at	CA827638	hypothetical protein LOC100277642	-	5e-1	At3g59640	glycine-rich protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.13138.1.S1_at	CA404833	-	-	5e-14	At3g03050	CSLD3 (CELLULOSE SYNTHASE-LIKE D3)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.9764.1.A1_at	CO526069	-	-	8e-1	At5g19790	RAP2.11 (related to AP2 11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	34	Arabidopsis thaliana	At4g39260	830082	GR-RBP8	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.C21000035_at	PsAffx.C21000035	-	-	9e-1	At1g15840	unknown protein	C.G.	S.X.	Please select
0.57	0	650	Hordeum vulgare	Contig13825_at	Contig13825	-	-	2e-1	At2g32440	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2)	C.G.	S.X.	Please select
0.51	9e-89	329	Oryza sativa	Os06g0110000	AK069429.1	-	Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79)(AtKAO2) (Cytochrome P450 88A4)	2e-1	At1g05160	CYP88A3 (CYTOCHROME P450 88 A3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-2	40	Populus trichocarpa	PtpAffx.215336.1.S1_at	pmrna29461	hypothetical protein	-	9e+0	At4g18720	transcription elongation factor-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	2e-41	171	Triticum aestivum	TaAffx.90183.2.S1_at	BQ606549	-	-	2e+1	At4g22820	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1617526_s_at	CB972978	hypothetical protein LOC100250396	-	8e-1	At2g10920	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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