Gene omics information

Query gene ID	Zm.39.1.S1_at
Gene name	Calcium-dependent protein kinase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.39.1.S1_at	D87042.1	Calcium-dependent protein kinase	-	1e-25	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	S.X.	H.G.	Please select
0.55	71.6	Zm.18127.1.S1_at	CN845217	membrin 11	-	1e-8	At5g50440	MEMB12 (MEMBRIN 12)	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.894.1.A1_at	AI770873	-	-	8e-1	At5g62300	40S ribosomal protein S20 (RPS20C)	S.X.	H.G.	Please select
0.46	58.4	ZmAffx.587.1.A1_at	AI715015	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.812.1.A1_at	AI770420	-	-	8e-4	At1g49730	protein kinase family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.12306.1.S1_at	CO517988	hypothetical protein LOC100216558	-	5e-2	At5g19680	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.237.1.A1_at	AI670249	-	-	1e+1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	S.X.	H.G.	Please select
0.36	41.3	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.32	33.4	Zm.3180.1.A1_at	AW179477	-	-	7e-1	At1g32700	zinc-binding family protein	S.X.	H.G.	Please select
0.30	29.8	Zm.8586.1.A1_at	BM338441	-	-	1e+0	At3g13227	serine-rich protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	98.4	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
8.2	98.0	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.1	98.0	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.8	97.2	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.1	96.8	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.8	96.6	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
4.4	96.2	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.3	96.1	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.2	96.0	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.0	95.8	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	3067	Zm.39.1.S1_s_at	D87042.1	Calcium-dependent protein kinase	-	1e-25	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	C.G.	S.X.	Please select
0.81	0	2367	Zm.20.1.S1_at	D84408.1	calcium dependent protein kinase	-	4e-25	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.57	0	944	Zm.873.1.S1_at	AW067411	-	-	3e-16	At4g38230	CPK26	C.G.	S.X.	Please select
0.14	1e-41	171	Zm.6306.1.A1_a_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.14	1e-41	171	Zm.6306.1.A1_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.09	2e-40	167	Zm.65.1.S1_at	AJ007366.1	calcium-dependent protein kinase	-	2e-12	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.04	5e-10	65	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select
0.03	2e-9	63	Zm.15857.1.A1_at	D85039.1	calcium-dependent protein kinase	-	2e-36	At1g50700	CPK33	C.G.	S.X.	Please select
0.06	9e-9	61	Zm.17082.1.S1_s_at	AY108221.1	-	-	4e-12	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-25	119	Arabidopsis thaliana	At4g35310	829685	CPK5 (calmodulin-domain protein kinase 5)	calmodulin-domain protein kinase CDPK isoform 5 (CPK5)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-25	119	Glycine max	Gma.2566.1.S1_at	BE820790	-	-	4e-70	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.63	0	1641	Hordeum vulgare	Contig4589_at	Contig4589	-	-	6e-30	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.61	0	1635	Oryza sativa	Os04g0584600	AB042550.1	-	Calcium dependent protein kinase	3e-44	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-9	63	Populus trichocarpa	PtpAffx.13732.1.S1_s_at	CK090049	calcium dependent protein kinase 1	-	1e-60	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	1653	Triticum aestivum	Ta.6301.1.S1_at	CA654806	Calcium-dependent protein kinase 2	-	1e-40	At4g38230	CPK26	C.G.	S.X.	Please select
0.05	3e-1	36	Vitis vinifera	1621772_at	CD005226	hypothetical protein LOC100253693	-	7e-20	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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