Gene omics information

Query gene ID	Zm.3876.1.S1_at
Gene name	hypothetical protein LOC100278092
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	S.X.	H.G.	Please select
0.67	85.8	Zm.13055.2.S1_at	CA403909	nuclear transcription factor Y subunit B-3	-	6e-19	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	S.X.	H.G.	Please select
0.61	79.5	Zm.13136.1.A1_at	CA404810	hypothetical protein LOC100191921	-	4e+0	At4g32900	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select
0.50	65.7	Zm.4733.1.A1_at	CD441088	hypothetical protein LOC100193930	-	2e-14	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.818.1.S1_at	AI770442	plant-specific domain TIGR01568 family protein	-	3e+0	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	S.X.	H.G.	Please select
0.27	24.6	Zm.17833.1.S1_at	CK394754	hypothetical protein LOC100277612	-	2e+0	At3g13740	URF 4-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.4	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.0	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.3	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	5e-20	97	Zm.13283.1.S1_at	CA826693	-	-	4e+0	At1g04778	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.960.1.S1_at	BU093044	hypothetical protein LOC100274333	-	1e-4	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.8743.1.A1_at	BM347268	blue copper protein	-	1e-1	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.13751.1.S1_at	AY105922.1	-	-	9e+0	At3g01700	AGP11	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.13797.2.S1_at	AY105820.1	-	-	3e-6	At1g73730	EIL3 (ETHYLENE-INSENSITIVE3-LIKE3)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.11797.1.A1_at	BM380828	hypothetical protein LOC100277496	-	6e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4044.1.A1_at	AY109936.1	hypothetical protein LOC100273897 /// hypothetical protein LOC100274738	-	5e+0	At5g13780	GCN5-related N-acetyltransferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4044.1.A1_a_at	AY109936.1	hypothetical protein LOC100273897 /// hypothetical protein LOC100274738	-	5e+0	At5g13780	GCN5-related N-acetyltransferase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At4g17030	827411	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.23551.1.S1_at	BE659564	-	-	3e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.06	2e-1	36	Hordeum vulgare	Contig18117_at	Contig18117	-	-	3e+0	At3g12930	-	C.G.	S.X.	Please select
0.03	2e-7	57	Oryza sativa	Os09g0422000	AK101900.1	-	Transferase family protein	1e-2	At3g58630	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.147443.1.A1_at	CV237283	-	-	2e+1	At5g03995	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	4e-16	85	Triticum aestivum	Ta.9498.3.S1_x_at	AL820015	-	-	1e+0	At5g35610	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select
0.04	3e-2	38	Vitis vinifera	1620734_at	CD799694	hypothetical protein LOC100246175	-	4e+0	At4g03827	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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