Gene omics information

Query gene ID	Zm.3875.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	S.X.	H.G.	Please select
0.60	77.8	Zm.2770.1.A1_at	BM380104	hypothetical protein LOC100192561	-	1e+0	At2g17860	pathogenesis-related thaumatin family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.3161.1.S1_at	AY108575.1	hypothetical protein LOC100273395	-	3e-6	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	S.X.	H.G.	Please select
0.44	55.7	Zm.8732.1.A1_at	BM347474	esterase	-	3e+0	At5g53030	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.10141.1.A1_at	AY108995.1	esterase	-	2e+0	At4g38690	1-phosphatidylinositol phosphodiesterase-related	S.X.	H.G.	Please select
0.35	38.9	Zm.7765.1.A1_at	BQ539662	-	-	3e-1	At1g53170	ERF8	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	94.7	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.1	94.3	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.5	92.6	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.5	92.6	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.5	92.6	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	38	Zm.8739.1.A1_at	BM334364	-	-	8e-1	At3g50300	transferase family protein	C.G.	S.X.	Please select
0.01	2e-1	38	Zm.2746.1.A1_at	AW067062	growth-regulating factor 5-like	-	9e-20	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	C.G.	S.X.	Please select
0.01	2e-1	38	Zm.14124.1.A1_at	CK347727	hypothetical protein LOC100192524	-	8e-1	At1g37150	HCS2 (holocarboxylase synthetase 2)	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.7677.1.A1_at	BM331802	metal ion binding protein	-	1e+0	At2g35760	integral membrane family protein	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.17817.1.A1_at	CF017298	zinc finger C-x8-C-x5-C-x3-H type family protein	-	1e-8	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.1653.2.A1_a_at	AY104306.1	histone deacetylase	-	8e-44	At3g44680	HDA9 (HISTONE DEACETYLASE 9)	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.14028.3.A1_at	BG841009	hypothetical protein LOC100192735	-	8e-6	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.9941.1.A1_at	CB350589	bHLH transcription factor	-	2e-1	At4g09750	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.7905.1.S1_at	BM078113	hypothetical protein LOC100193292	-	6e-15	At1g09340	CRB (CHLOROPLAST RNA BINDING)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-31	139	Arabidopsis thaliana	At1g50200	841442	ALATS (ALANYL-TRNA SYNTHETASE)	F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-16	87	Glycine max	GmaAffx.83421.1.S1_at	CA851999	-	-	4e-22	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.68	0	1100	Hordeum vulgare	Contig3738_at	Contig3738	-	-	3e-20	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.70	0	1245	Oryza sativa	Os10g0182000	AK066368.1	-	Alanyl-tRNA synthetase, mitochondrial precursor(EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS)	3e-23	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-17	91	Populus trichocarpa	PtpAffx.30703.1.A1_at	CV264174	hypothetical protein	-	2e-19	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	0	827	Triticum aestivum	Ta.2136.1.S1_at	BJ320333	-	-	7e-9	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1619142_at	CB003940	-	-	2e+0	At4g36800	RCE1 (RUB1 CONJUGATING ENZYME 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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