Gene omics information

Query gene ID	Zm.3864.1.A1_at
Gene name	calmodulin2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	S.X.	H.G.	Please select
0.80	94.0	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.7720.1.S1_at	CK347322	-	-	2e-10	At2g21630	transport protein, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.730.1.A1_at	AY104952.1	hypothetical protein LOC100191862	-	4e-86	At3g46440	UXS5	S.X.	H.G.	Please select
0.59	76.1	Zm.17771.1.S1_at	CF623570	-	-	5e+0	At5g27860	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.9	95.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.9	95.7	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3	94.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	930	Zm.85.1.S1_at	CD970480	calmodulin2	-	1e-69	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.41	3e-154	543	Zm.3077.2.S1_x_at	CF061929	calmodulin	-	4e-97	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.42	3e-154	543	Zm.176.1.S1_at	AY109837.1	calmodulin	-	8e-77	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.44	2e-149	527	Zm.352.1.S1_at	AF031482.1	calmodulin	-	5e-90	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.41	2e-149	527	Zm.1451.2.S1_x_at	CF021148	calmodulin	-	2e-111	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.41	2e-149	527	Zm.1451.2.S1_at	CF021148	calmodulin	-	2e-111	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.41	5e-144	510	Zm.3077.1.A1_at	CF637365	calmodulin	-	4e-82	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.41	5e-144	510	Zm.3077.1.A1_a_at	CF637365	calmodulin	-	4e-82	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.41	3e-130	464	Zm.1451.1.S1_x_at	AY104071.1	calmodulin	-	2e-111	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	8e-80	297	Arabidopsis thaliana	At3g56800	824847	CAM3 (CALMODULIN 3)	encodes a calmodulin	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	2e-121	436	Glycine max	GmaAffx.91756.1.S1_at	CF807481	Calmodulin (SCaM-2)	-	2e-85	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.48	2e-153	541	Hordeum vulgare	Contig1328_s_at	Contig1328	-	-	3e-82	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.55	2e-143	510	Oryza sativa	Os07g0687200	AF441191.1	-	Calmodulin (CaM) (BC329)	2e-108	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.50	1e-107	391	Populus trichocarpa	Ptp.1551.2.S1_at	BU882242	hypothetical protein	-	6e-98	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	710	Triticum aestivum	TaAffx.113236.1.S1_at	CA626069	-	-	6e-30	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.39	8e-105	379	Vitis vinifera	1610944_at	BQ794641	hypothetical protein LOC100261610	-	1e-103	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage