CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3841.1.A1_at

Gene name SKP1-like protein 1A

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.8 Zm.3841.1.A1_at AW057015 SKP1-like protein 1A - 3e-3 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) S.X. H.G.
0.33 36.0 Zm.13938.1.A1_at CB350917 - - 4e-117 At1g50250 FTSH1 (FtsH protease 1) S.X. H.G.
0.28 28.1 Zm.5887.1.S1_at AI664885 hypothetical protein LOC100193921 - 4e-1 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) S.X. H.G.
0.28 28.1 Zm.14784.1.A1_at BG841481 - - 3e+0 At3g01175 - S.X. H.G.
0.25 21.3 ZmAffx.734.1.A1_at AI740044 - - 1e+1 At5g01670 aldose reductase, putative S.X. H.G.
0.21 15.5 Zm.13738.1.A1_at CA398635 hypothetical protein LOC100273462 - 1e-1 At5g25080 - S.X. H.G.
0.18 11.6 Zm.4452.1.A1_at AI691174 - - 4e+0 At3g57740 protein kinase family protein S.X. H.G.
0.18 11.6 Zm.13162.1.A1_at CO521967 - - 9e-3 At3g02040 SRG3 (senescence-related gene 3) S.X. H.G.
0.17 10.6 Zm.14074.1.A1_at AY104605.1 - - 2e-11 At1g07110 F2KP (FRUCTOSE-2,6-BISPHOSPHATASE) S.X. H.G.
0.13 6.8 Zm.155.1.A1_a_at AI667827 brittle endosperm1 - 4e-3 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
48.9 100.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.0 99.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.8 99.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5 99.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2 99.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320464 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-28 123 Zm.11647.1.A1_at CO532634 hypothetical protein LOC100193107 - 3e-14 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.13 1e-15 81 Zm.14147.1.A1_at CD432997 hypothetical protein LOC100273349 - 6e-13 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.02 2e-2 38 Zm.17198.1.A1_at AY108769.1 BSD domain containing protein - 1e-2 At3g49800 BSD domain-containing protein C.G. S.X.
0.02 7e-2 36 Zm.19209.1.S1_at CO530765 hypothetical protein LOC100191367 - 6e-14 At2g19490 recA family protein C.G. S.X.
0.04 7e-2 36 Zm.11547.1.S1_at CA827895 hypothetical protein LOC100276375 - 1e+1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.02 3e-1 34 Zm.9238.1.A1_at CO533275 - - 5e-2 At2g23320 WRKY15 C.G. S.X.
0.04 3e-1 34 Zm.8153.1.S1_at BM073105 - - 3e-1 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
0.02 3e-1 34 Zm.7914.1.A1_at AY103800.1 hypothetical protein LOC100277669 - 5e-11 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.02 3e-1 34 Zm.7914.1.A1_a_at AY103800.1 hypothetical protein LOC100277669 - 5e-11 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 3e-3 42 Arabidopsis thaliana At1g75950 843928 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. - - - C.G. S.X.
0.10 6e-5 48 Glycine max Gma.5575.2.S1_at CD403903 - - 7e-30 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.17 3e-17 87 Hordeum vulgare HZ65O04r_at HZ65O04r - - 4e-6 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.14 4e-19 95 Oryza sativa Os02g0101600 CB967135 - SKP1 component family protein 2e-17 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.11 1e-3 44 Populus trichocarpa PtpAffx.32590.2.A1_s_at CA931381 hypothetical protein - 1e-24 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.19 1e-14 79 Triticum aestivum TaAffx.52150.1.S1_at CA712260 - - 9e-4 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.06 8e-7 52 Vitis vinifera 1607758_at BQ796718 hypothetical protein LOC100267502 - 3e-20 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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