Gene omics information

Query gene ID	Zm.383.1.S1_s_at
Gene name	leucine-rich repeat transmembrane protein kinase 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	Zm.383.1.S1_s_at	AF023165.1	leucine-rich repeat transmembrane protein kinase 2	-	1e-22	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	S.X.	H.G.	Please select
0.74	90.3	Zm.496.1.S1_at	AF236370.1	prohibitin3	-	7e-7	At5g40770	ATPHB3 (PROHIBITIN 3)	S.X.	H.G.	Please select
0.59	76.1	Zm.17636.1.A1_at	CK368463	-	-	1e+0	At5g34882	-	S.X.	H.G.	Please select
0.59	76.1	Zm.7152.1.A1_at	AY110483.1	hypothetical protein LOC100216962	-	7e-5	At5g47500	pectinesterase family protein	S.X.	H.G.	Please select
0.58	75.1	Zm.16536.1.A1_at	AY103592.1	spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	S.X.	H.G.	Please select
0.57	75.1	Zm.3086.2.A1_a_at	CF633704	alpha-1,4-glucan-protein synthase	-	5e+0	At4g11350	transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.56	74.4	Zm.16547.1.A1_at	CO520746	aldehyde dehydrogenase, dimeric NADP-preferring	-	6e+0	At3g10020	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.16536.1.A1_a_at	AY103592.1	hypothetical protein LOC100272866 /// spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	S.X.	H.G.	Please select
0.53	69.1	Zm.17902.1.A1_at	CK786798	-	-	3e+0	At5g65350	histone H3	S.X.	H.G.	Please select
0.52	67.3	Zm.6207.2.A1_x_at	BM078651	60S ribosomal protein L15	-	2e-31	At4g17390	60S ribosomal protein L15 (RPL15B)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
10.4	98.4	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
9.1	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	0	1306	Zm.382.2.A1_at	AY109511.1	Leucine-rich repeat transmembrane protein kinase 2	-	1e-22	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.77	0	1090	Zm.382.1.S1_at	CF020226	leucine-rich transmembrane protein kinase1	-	4e-16	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.20	7e-68	258	Zm.11939.1.A1_at	CF624620	-	-	7e-21	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.16	2e-31	137	Zm.9097.1.A1_at	BM266610	-	-	1e+0	At2g17640	ATSERAT3	C.G.	S.X.	Please select
0.16	4e-8	59	Zm.2717.1.A1_at	CK347342	-	-	6e-6	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.05	6e-7	56	Zm.6513.1.A1_at	CA401858	hypothetical protein LOC100273714	-	9e-3	At1g78530	protein kinase family protein	C.G.	S.X.	Please select
0.01	3e-5	50	Zm.2367.1.S1_at	AW497505	Pti1 protein	-	5e-30	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	1e-4	48	Zm.6463.1.A1_at	AW066999	hypothetical protein LOC100272541	-	2e-5	At2g28590	protein kinase family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.5677.1.A1_at	CF057393	-	-	6e-4	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-22	109	Arabidopsis thaliana	At3g14350	820655	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-16	89	Glycine max	Gma.8678.1.S1_at	BE823227	-	-	9e-37	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	C.G.	S.X.	Please select
0.16	4e-48	192	Hordeum vulgare	HVSMEl0009B19r2_s_at	HVSMEl0009B19r2	-	-	1e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.63	0	866	Oryza sativa	Os03g0183800	AK100621.1	-	-	9e-8	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	9e-27	123	Populus trichocarpa	Ptp.2221.1.A1_at	CV231780	hypothetical protein	-	9e-40	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	5e-68	260	Triticum aestivum	Ta.29363.1.S1_at	BJ263473	-	-	2e-6	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.16	2e-33	143	Vitis vinifera	1619614_at	CF372273	hypothetical protein LOC100249831	-	2e-36	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage