Gene omics information

Query gene ID	Zm.3824.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.3824.1.S1_at	AW424570	-	-	2e-35	At3g23340	ckl10 (Casein Kinase I-like 10)	S.X.	H.G.	Please select
0.89	96.8	Zm.14487.1.S1_at	AY104322.1	lipoxygenase	-	7e-3	At3g45140	LOX2 (LIPOXYGENASE 2)	S.X.	H.G.	Please select
0.82	94.6	Zm.12241.2.S1_a_at	AY106105.1	-	-	2e+0	At1g10657	unknown protein	S.X.	H.G.	Please select
0.75	90.8	Zm.908.1.A1_at	AW066952	-	-	3e-1	At1g55810	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	S.X.	H.G.	Please select
0.56	74.4	Zm.7440.1.A1_at	BM380339	hypothetical protein LOC100273378	-	5e-1	At2g14660	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.14099.1.A1_at	CO531535	hypothetical protein AY107844 /// hypothetical protein LOC100191642	-	2e+0	At4g14500	-	S.X.	H.G.	Please select
0.53	69.1	Zm.16993.1.A1_at	AY093415.1	DNA methyl transferase1	-	5e-11	At4g08990	DNA (cytosine-5-)-methyltransferase, putative	S.X.	H.G.	Please select
0.53	69.1	Zm.1030.1.A1_at	AY106168.1	-	-	6e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	S.X.	H.G.	Please select
0.47	59.9	Zm.10347.1.S1_s_at	AF012888.1	Tousled-like kinase 1 /// Tousled-like kinase 2	-	3e-52	At5g20930	TSL (TOUSLED)	S.X.	H.G.	Please select
0.40	48.5	Zm.8777.1.A1_at	BM339893	hypothetical protein LOC100192711 /// hypothetical protein LOC100279677	-	5e+0	At2g23149	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	648	Zm.15597.1.S1_at	CD433205	hypothetical protein LOC100276919	-	5e-7	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	C.G.	S.X.	Please select
0.36	2e-126	452	Zm.2307.1.S1_at	AY104400.1	hypothetical protein LOC100279946	-	1e-17	At4g26100	CK1 (CASEIN KINASE 1)	C.G.	S.X.	Please select
0.12	7e-27	121	Zm.9725.1.S1_at	CF623812	-	-	3e-34	At5g57015	ckl12 (Casein Kinase I-like 12)	C.G.	S.X.	Please select
0.15	7e-21	101	Zm.6716.1.A1_at	CF636119	casein kinase I isoform delta-like	-	2e-25	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.16	7e-18	91	Zm.14358.1.A1_at	CA402172	hypothetical protein LOC100217181	-	2e-10	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.12	3e-17	89	Zm.12384.1.A1_at	AY111304.1	-	-	5e-4	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.12	3e-17	89	Zm.12384.1.S1_at	CK370080	-	-	5e-4	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.06	6e-12	71	Zm.13119.1.A1_at	AY104133.1	-	-	7e-45	At4g28880	ckl3 (Casein Kinase I-like 3)	C.G.	S.X.	Please select
0.08	6e-12	71	Zm.13119.1.S1_at	AY104133.1	casein kinase I isoform delta-like	-	7e-45	At4g28880	ckl3 (Casein Kinase I-like 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-35	151	Arabidopsis thaliana	At3g23340	821915	ckl10 (Casein Kinase I-like 10)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	1e-49	198	Glycine max	GmaAffx.45359.2.S1_at	BQ453165	-	-	1e-60	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	C.G.	S.X.	Please select
0.37	3e-156	551	Hordeum vulgare	Contig5413_at	Contig5413	-	-	4e-34	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.52	0	753	Oryza sativa	Os04g0514800	AK111987.1	-	Dual specificity kinase 1	7e-48	At1g03930	ADK1 (dual specificity kinase 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	4e-74	280	Populus trichocarpa	PtpAffx.75129.2.S1_s_at	CF231604	hypothetical protein	-	9e-120	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	6e-14	79	Triticum aestivum	Ta.14567.1.S1_at	BJ321982	-	-	1e-15	At5g44100	ckl7 (Casein Kinase I-like 7)	C.G.	S.X.	Please select
0.35	7e-85	313	Vitis vinifera	1610674_at	CF511328	hypothetical protein LOC100242639	-	2e-158	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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