Gene omics information

Query gene ID	Zm.3821.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.3821.1.A1_at	CF635078	-	-	1e+0	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	S.X.	H.G.	Please select
0.91	99.0	Zm.6421.1.A1_at	AI834083	-	-	1e-9	At2g46380	unknown protein	S.X.	H.G.	Please select
0.83	95.6	Zm.12718.2.A1_at	AY106773.1	SET domain protein 113	-	6e+0	At5g53742	-	S.X.	H.G.	Please select
0.80	94.0	Zm.3911.1.A1_at	CA401442	-	-	7e-25	At3g45040	phosphatidate cytidylyltransferase family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.16931.1.A1_s_at	AI714400	hypothetical protein LOC100279421	-	3e-1	At5g46610	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.16352.1.A1_at	AY108001.1	-	-	1e+0	At2g32340	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.8	96.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.4	94.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.3	94.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.3	94.7	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-4	48	Zm.8996.1.A1_at	AY109834.1	-	-	5e-2	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.3441.1.A1_at	CN844939	hypothetical protein LOC100193908	-	4e-1	At4g33467	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.5187.1.A1_at	AY104276.1	hypothetical protein LOC100272983	-	2e-4	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.89.1.A1_at	L21006.1	mitochondrial chaperonin 60	-	1e-80	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.5394.1.A1_at	CF632768	-	-	1e-7	At1g17720	ATB BETA	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.15168.1.A1_at	BM334462	-	-	1e+0	At5g43066	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	32	Zm.9767.1.A1_at	BM340742	-	-	3e-1	At1g77122	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	32	Zm.963.1.S1_at	AY105204.1	hypothetical protein LOC100273769	-	4e-5	At5g58220	TTL (Transthyretin-Like protein)	C.G.	S.X.	Please select
0.01	9e+0	32	Zm.7004.1.A1_at	CD447791	-	-	7e-10	At2g33800	ribosomal protein S5 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	36	Arabidopsis thaliana	At4g27950	828908	CRF4 (CYTOKININ RESPONSE FACTOR 4)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e+0	36	Glycine max	Gma.3899.1.A1_at	AW307194	-	-	5e-2	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	C.G.	S.X.	Please select
0.27	3e-98	359	Hordeum vulgare	Contig10691_s_at	Contig10691	-	-	8e-1	At1g67330	unknown protein	C.G.	S.X.	Please select
0.31	1e-79	299	Oryza sativa	Os10g0577800	AK121290.1	-	Conserved hypothetical protein	3e-1	At4g34080	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-2	42	Populus trichocarpa	PtpAffx.164014.1.S1_at	AJ777114	hypothetical protein	-	3e-10	At2g35510	SRO1 (SIMILAR TO RCD ONE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	6e-86	319	Triticum aestivum	Ta.2438.1.S1_at	CD903064	-	-	1e+0	At1g29830	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	34	Vitis vinifera	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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