Gene omics information

Query gene ID	Zm.3806.1.S1_at
Gene name	hypothetical protein LOC100280019
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.2	Zm.3806.1.S1_at	CF009077	hypothetical protein LOC100280019	-	4e-2	At3g17060	pectinesterase family protein	S.X.	H.G.	Please select
0.64	81.7	Zm.5048.7.A1_x_at	AI622162	-	-	3e-11	At5g07090	40S ribosomal protein S4 (RPS4B)	S.X.	H.G.	Please select
0.56	74.4	Zm.14873.1.A1_x_at	BM337239	-	-	1e+0	At4g05620	F-box family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.5346.1.S1_at	AY110712.1	-	-	1e-3	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	S.X.	H.G.	Please select
0.56	74.4	Zm.3509.1.A1_at	AI978044	-	-	1e+0	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	S.X.	H.G.	Please select
0.55	71.6	Zm.2099.2.S1_at	AI691647	protein phosphatase 2A regulatory subunit A	-	1e-145	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	S.X.	H.G.	Please select
0.51	66.4	Zm.11865.1.A1_at	BM381345	hypothetical protein LOC100279047	-	3e-1	At2g39270	adenylate kinase family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.3508.1.S1_at	BQ619526	SC3 protein	-	3e-11	At2g20840	secretory carrier membrane protein (SCAMP) family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.3770.1.S1_a_at	AW225042	hypothetical protein LOC100278844	-	1e-43	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	S.X.	H.G.	Please select
0.45	56.4	Zm.505.2.A1_a_at	AI665681	Glucose translocator1	-	8e-1	Atcg00800	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.4	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-3	42	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.1975.1.S1_at	BF729513	pectinesterase-1	-	7e-3	At3g05610	pectinesterase family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.6074.1.A1_at	CF033495	SINA4	-	1e-8	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.03	7e-2	38	Zm.3801.2.A1_at	AY112091.1	-	-	1e+0	At4g01590	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Zm.3801.2.S1_at	AY112091.1	RNA-binding protein 12	-	1e+0	At4g01590	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Zm.3801.2.S1_a_at	AY112091.1	hypothetical protein LOC100277001	-	1e+0	At4g01590	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.3801.1.S1_x_at	BU097753	hypothetical protein LOC100277001	-	7e-1	At4g01590	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.1449.2.S1_a_at	BM382632	early drought induced protein	-	3e-1	At1g45248	-	C.G.	S.X.	Please select
0.01	3e-1	36	ZmAffx.5.1.S1_at	AY372246.1	cellulose synthase catalytic subunit 12	-	4e-26	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-2	40	Arabidopsis thaliana	At3g17060	820963	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	PsAffx.C168000041_at	PsAffx.C168000041	-	-	3e+0	At5g10450	GRF6 (G-box regulating factor 6)	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	HV_CEb0005M21r2_s_at	HV_CEb0005M21r2	-	-	3e+0	At1g15800	unknown protein	C.G.	S.X.	Please select
0.57	0	771	Oryza sativa	Os03g0309400	AY343494.2	-	Pectinesterase family protein	2e-1	At3g17060	pectinesterase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.207941.1.S1_at	pmrna15760	hypothetical protein	-	5e-1	At3g17060	pectinesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-7	56	Triticum aestivum	TaAffx.36894.2.S1_at	BJ303490	-	-	2e-2	At5g47500	pectinesterase family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Vitis vinifera	1608523_at	CB339561	hypothetical protein LOC100253981	-	4e+0	At5g14340	AtMYB40 (myb domain protein 40)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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