Gene omics information

Query gene ID	Zm.3780.1.S1_at
Gene name	low-molecular-weight cysteine-rich protein LCR69
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.3780.1.S1_at	AW438304	low-molecular-weight cysteine-rich protein LCR69	-	9e-2	At1g47317	-	S.X.	H.G.	Please select
0.67	85.8	Zm.4846.1.A1_at	BQ538226	cyclin B2	-	3e-7	At1g76310	CYCB2	S.X.	H.G.	Please select
0.67	85.8	Zm.4845.1.S1_x_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	S.X.	H.G.	Please select
0.61	79.5	Zm.14138.2.A1_at	CD219182	hypothetical protein LOC100275347	-	3e-9	At1g56423	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.6196.2.S1_at	AI677134	-	-	3e+0	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.9411.1.S1_at	CA827391	SNF1-related protein kinase regulatory subunit beta-2	-	4e-1	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.1	99.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.0	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.6	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.5	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.3	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-90	331	Zm.3780.3.S1_at	CF008471	-	-	2e+0	At1g29720	protein kinase family protein	C.G.	S.X.	Please select
0.06	2e-4	46	Zm.7295.1.S1_at	CO526541	hypothetical protein LOC100276937 /// low-molecular-weight cysteine-rich protein LCR69	-	2e-2	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	C.G.	S.X.	Please select
0.03	1e-1	36	ZmAffx.1161.1.A1_at	AW438287	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-	5e-2	At5g51010	rubredoxin family protein	C.G.	S.X.	Please select
0.03	1e-1	36	ZmAffx.1161.1.S1_at	AW438287	-	-	5e-2	At5g51010	rubredoxin family protein	C.G.	S.X.	Please select
0.04	1e-1	36	ZmAffx.1192.1.A1_at	BE025301	-	-	6e+0	At3g53650	histone H2B, putative	C.G.	S.X.	Please select
0.04	1e-1	36	ZmAffx.1192.1.S1_at	BE025301	hypothetical protein LOC100278640	-	6e+0	At3g53650	histone H2B, putative	C.G.	S.X.	Please select
0.03	1e-1	36	ZmAffx.1149.1.A1_at	AW424528	-	-	3e+0	At3g07930	HhH-GPD base excision DNA repair family protein	C.G.	S.X.	Please select
0.03	1e-1	36	ZmAffx.1149.1.S1_at	AW424528	-	-	3e+0	At3g07930	HhH-GPD base excision DNA repair family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.3646.2.S1_a_at	CO527617	hypothetical protein LOC100272696	-	1e-7	At4g26780	AR192	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-2	38	Arabidopsis thaliana	At1g47317	3767374	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.7932.2.S1_at	BE211513	-	-	6e-2	At2g42350	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.05	4e-2	38	Hordeum vulgare	Contig3217_s_at	Contig3217	-	-	2e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.10	3e-3	44	Oryza sativa	Os02g0629800	AK121915.1	-	Cp-thionin	1e-3	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.215462.1.S1_at	pmrna29671	hypothetical protein	-	4e-1	At5g66800	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-2	40	Triticum aestivum	Ta.28550.1.S1_at	BJ314399	amylase inhibitor-like protein	-	4e+0	At4g19095	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1616567_at	CF517357	hypothetical protein LOC100254180	-	8e-1	At4g29860	EMB2757 (EMBRYO DEFECTIVE 2757)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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