Gene omics information

Query gene ID	Zm.3775.1.A1_at
Gene name	chaperonin
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select
0.46	58.4	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.6569.2.S1_a_at	AY107413.1	hypothetical protein LOC100276303	-	1e+0	At3g59900	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	S.X.	H.G.	Please select
0.42	51.3	Zm.11255.1.S1_at	AY107659.1	hypothetical protein LOC100217136	-	3e-32	At5g40200	DegP9 (DegP protease 9)	S.X.	H.G.	Please select
0.38	44.2	Zm.7564.1.A1_at	BM078962	-	-	4e-1	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	S.X.	H.G.	Please select
0.38	44.2	Zm.13112.2.S1_a_at	AI714527	-	-	2e-7	At5g63420	emb2746 (embryo defective 2746)	S.X.	H.G.	Please select
0.27	24.6	Zm.6105.1.S1_at	BG517834	-	-	4e+0	At2g27280	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	97.8	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.5	97.1	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.8	96.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.5	96.3	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	3e-40	165	Zm.4705.1.A1_at	BG840802	-	-	2e-6	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.12164.1.A1_at	CO521714	hypothetical protein LOC100193480	-	1e-1	At5g60490	FLA12	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.774.1.S1_at	CF625446	hypothetical protein LOC100191508	-	2e-17	At4g14160	transport protein, putative	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.7010.1.A1_a_at	CF049770	nucleolar protein Nop56	-	1e-30	At3g12860	nucleolar protein Nop56, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9854.3.S1_a_at	AY109217.1	-	-	2e-7	At2g44770	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9169.2.S1_a_at	CO521754	hypothetical protein LOC100194136	-	9e-10	At2g47970	NPL4 family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9169.2.S1_x_at	CO521754	hypothetical protein LOC100194136	-	9e-10	At2g47970	NPL4 family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9169.2.S1_at	CO521754	hypothetical protein LOC100194136	-	9e-10	At2g47970	NPL4 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-5	50	Arabidopsis thaliana	At1g14980	838063	CPN10 (CHAPERONIN 10)	Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.psMY008iD09r_at	PsAffx.psMY008iD09r	-	-	4e+0	At2g33830	dormancy/auxin associated family protein	C.G.	S.X.	Please select
0.32	1e-61	236	Hordeum vulgare	Contig4654_at	Contig4654	-	-	2e-2	At3g57930	unknown protein	C.G.	S.X.	Please select
0.38	5e-82	305	Oryza sativa	Os07g0641700	AK122129.1	-	10 kDa chaperonin (Protein CPN10) (Protein groES)	8e-2	At3g22070	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.43888.1.A1_a_at	CV254807	hypothetical protein	-	4e-1	At5g04250	OTU-like cysteine protease family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	3e-147	521	Triticum aestivum	Ta.13043.1.S1_x_at	CA617125	-	-	1e-3	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619991_at	CF373415	-	-	3e+0	At4g24231	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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