Gene omics information

Query gene ID	Zm.3773.1.S1_at
Gene name	hypothetical protein LOC100193094
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.3773.1.S1_at	AY110209.1	hypothetical protein LOC100193094	-	4e+0	At4g18620	-	S.X.	H.G.	Please select
0.50	65.7	Zm.3171.1.A1_at	AY104553.1	RNA binding protein	-	4e-12	At2g43970	La domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.4860.2.A1_at	AI770577	-	-	3e+0	At2g34140	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.40	48.5	Zm.4823.1.A1_at	CD999070	-	-	4e-23	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	S.X.	H.G.	Please select
0.32	33.4	Zm.384.1.A1_at	AF001635.1	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.6946.2.A1_at	CO528668	Hypothetical protein LOC100191975	-	3e-6	At1g11680	CYP51G1 (CYTOCHROME P450 51G1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	2444	Zm.3773.1.A1_at	AY110209.1	Hypothetical protein LOC100193094	-	4e+0	At4g18620	-	C.G.	S.X.	Please select
0.36	4e-63	242	Zm.12543.1.A1_at	CO529256	nuclear transcription factor Y subunit A-10	-	5e-1	At3g14020	NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.1240.1.A1_at	AI001233	hypothetical protein LOC100274890	-	6e-3	At3g29034	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.8336.1.S2_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.8336.1.S1_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.12700.1.A1_at	BU572292	serine carboxypeptidase K10B2.2	-	2e+1	At5g35600	HDA7 (histone deacetylase7)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.10316.1.S1_at	AB061271.2	NAS2 protein	-	1e+1	At5g04950	NAS1 (NICOTIANAMINE SYNTHASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Arabidopsis thaliana	At4g18620	827596	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	3e-1	38	Glycine max	PsAffx.C78000031_at	PsAffx.C78000031	-	-	2e+0	At5g42070	unknown protein	C.G.	S.X.	Please select
0.19	8e-12	71	Hordeum vulgare	Contig11270_at	Contig11270	-	-	2e-3	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	C.G.	S.X.	Please select
0.12	4e-17	91	Oryza sativa	Os03g0647600	AK106398.1	-	Nf-Y-A subunit	1e+0	At4g17310	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.49827.1.A1_at	CV269507	hypothetical protein	-	3e-55	At3g62310	RNA helicase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	7e-11	69	Triticum aestivum	Ta.27414.1.S1_at	BQ801561	-	-	1e+1	At5g26890	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Vitis vinifera	1615298_s_at	BQ793084	-	-	9e-1	At2g43910	thiol methyltransferase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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