Gene omics information

Query gene ID	Zm.3760.1.S1_at
Gene name	hypothetical protein LOC100216911
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.3760.1.S1_at	AW056221	hypothetical protein LOC100216911	-	3e-12	At1g31480	SGR2 (SHOOT GRAVITROPISM 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.435.1.S1_at	AF069910.1	pyruvate dehydrogenase E1 beta subunit isoform 3	-	3e-28	At5g50850	MAB1 (MACCI-BOU)	S.X.	H.G.	Please select
0.32	33.4	Zm.3492.1.A1_at	BG550327	hypothetical protein LOC100275578	-	2e-1	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	S.X.	H.G.	Please select
0.12	5.9	Zm.3644.1.S1_at	CO525387	hypothetical protein AY111178 /// hypothetical protein LOC100191318 /// hypothetical protein LOC100217011	-	8e-1	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	S.X.	H.G.	Please select
0.10	4.6	Zm.13640.1.A1_at	CK348107	-	-	3e+0	At2g35600	BRXL1 (BREVIS RADIX LIKE 1)	S.X.	H.G.	Please select
0.08	3.4	Zm.16644.1.S1_x_at	CF602545	hypothetical protein LOC100191653	-	4e-8	At5g66080	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	38	ZmAffx.1336.1.S1_at	11990232-84	-	-	2e-46	Atcg01040	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.9342.1.A1_at	BM340304	-	-	6e-1	At2g25890	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7240.1.S1_at	BI430972	-	-	1e-18	At5g61450	2-phosphoglycerate kinase-related	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3868.1.A1_at	CK370746	-	-	3e-19	At5g07070	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.329.2.A1_at	S48563.1	shrunken-2 locus	-	1e-9	At1g27680	APL2 (ADPGLC-PPASE LARGE SUBUNIT)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.329.2.S1_a_at	S48563.1	shrunken-2 locus	-	1e-9	At1g27680	APL2 (ADPGLC-PPASE LARGE SUBUNIT)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15896.1.S1_s_at	AY103971.1	hypothetical protein LOC100279769	-	4e-16	At4g32010	HSL1 (HSI2-LIKE 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15896.1.A1_at	AY103971.1	-	-	4e-16	At4g32010	HSL1 (HSI2-LIKE 1)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9604.1.A1_at	BM333654	-	-	6e+0	At3g44740	ATP binding / aminoacyl-tRNA ligase/ glycine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-12	73	Arabidopsis thaliana	At1g31480	840038	SGR2 (SHOOT GRAVITROPISM 2)	encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-1	36	Glycine max	Gma.4442.1.S1_at	BQ080543	-	-	8e+0	At2g32190	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	HB08F20r_at	HB08F20r	-	-	2e+0	At4g19200	proline-rich family protein	C.G.	S.X.	Please select
0.28	2e-85	317	Oryza sativa	Os08g0110700	AK066813.1	-	Shoot gravitropism 2	3e-8	At1g31480	SGR2 (SHOOT GRAVITROPISM 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-1	38	Populus trichocarpa	PtpAffx.127241.1.A1_at	CV265649	hypothetical protein	-	9e-15	At1g31480	SGR2 (SHOOT GRAVITROPISM 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	5e-122	438	Triticum aestivum	Ta.14254.1.S1_at	BQ841688	-	-	2e-3	At1g31480	SGR2 (SHOOT GRAVITROPISM 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1612603_at	CD802337	-	-	2e+0	At3g57850	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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