Gene omics information

Query gene ID	Zm.376.1.A1_at
Gene name	Hypoxically induced transcript 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.376.1.A1_at	BM074849	Hypoxically induced transcript 2	-	2e-3	At1g05000	tyrosine specific protein phosphatase family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.17357.1.S1_at	CK370769	-	-	5e+0	At1g29195	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	S.X.	H.G.	Please select
0.07	2.9	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	S.X.	H.G.	Please select
0.05	1.9	Zm.18532.1.A1_at	CF637107	hypothetical protein LOC100273655	-	7e-5	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	S.X.	H.G.	Please select
0.04	1.5	Zm.6196.1.A1_a_at	BG265419	hypothetical protein LOC100279988	-	7e-1	At4g35880	aspartyl protease family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.1	98.8	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.1	98.8	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.0	98.8	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.5	98.6	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.8	98.5	GSM206321	Lower pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.7	98.5	GSM206315	Upper pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.2	98.2	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.0	98.2	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.4	98.1	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	1e-30	133	Zm.4036.1.A1_at	CD994340	tyrosine specific protein phosphatase family protein	-	1e-11	At1g05000	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please select
0.05	9e-13	73	Zm.6045.2.A1_a_at	BM337093	guanine nucleotide-binding protein beta subunit-like protein	-	2e-10	At1g18080	ATARCA	C.G.	S.X.	Please select
0.01	3e-3	42	Zm.13052.1.S1_at	AY107104.1	indeterminate growth1	-	5e-6	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.8637.1.A1_at	CF630420	hypothetical protein LOC100276127	-	8e-2	At1g25250	AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.5980.1.S1_at	AI739740	thioredoxin reductase 2	-	5e-11	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.3087.1.A1_at	BF728549	CREG1 protein	-	2e+0	At4g09260	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17518.1.S1_at	CN844144	VIP1 protein	-	6e-1	At2g01340	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.437.1.A1_a_at	AF007580.1	translation initiation factor	-	7e-162	At1g54270	EIF4A-2	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.17088.1.A1_at	BM497690	pnFL-2	-	4e-2	At1g19180	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	44	Arabidopsis thaliana	At1g05000	839348	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-5	50	Glycine max	Gma.6942.1.S1_at	BE802944	-	-	4e-14	At1g05000	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please select
0.31	4e-43	174	Hordeum vulgare	Contig7617_at	Contig7617	-	-	7e-4	At1g05000	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please select
0.28	5e-33	143	Oryza sativa	Os02g0771400	9630.m05250	-	Putative tyrosine phosphatase family protein	7e-2	At2g32960	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	34	Populus trichocarpa	PtpAffx.90714.1.A1_at	CV245209	hypothetical protein	-	3e-8	At4g03960	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	5e-84	311	Triticum aestivum	Ta.25515.1.S1_at	CD373646	-	-	5e-1	At1g05000	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please select
0.05	9e-3	40	Vitis vinifera	1616719_at	CF204819.1	-	-	6e-9	At3g02800	phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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