CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3757.1.A1_at

Gene name ferredoxin-3

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.3757.1.A1_at CB351276 ferredoxin-3 - 1e+0 At4g00670 DNA binding S.X. H.G.
0.80 94.0 Zm.6364.1.S1_at T20372 - - 8e-1 At2g22060 - S.X. H.G.
0.80 94.0 Zm.12152.1.S1_at CK394699 hypothetical protein LOC100274505 - 1e-5 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) S.X. H.G.
0.80 94.0 Zm.9088.1.A1_at CB350848 - - 1e+0 At2g06908 unknown protein S.X. H.G.
0.76 91.1 Zm.15780.1.A1_at CD484576 - - 4e+0 At3g01472 CPuORF33 (Conserved peptide upstream open reading frame 33) S.X. H.G.
0.69 86.5 Zm.8383.1.A1_at BM078678 PCO062666 protein - 4e-1 At5g47960 ATRABA4C S.X. H.G.
0.62 79.8 Zm.15448.1.S1_at CD448349 plastidic phosphate translocator-like protein1 - 4e-24 At4g32390 phosphate translocator-related S.X. H.G.
0.61 79.5 Zm.16502.5.A1_at AI586439 hypothetical protein LOC100280237 - 1e-12 At5g61780 tudor domain-containing protein / nuclease family protein S.X. H.G.
0.61 79.5 Zm.16892.1.A1_at CO520304 calmodulin binding protein - 2e-2 At3g22190 IQD5 (IQ-domain 5) S.X. H.G.
0.56 74.4 Zm.652.1.S1_at AY029559.1 methyl binding domain - 2e-1 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.8 98.8 GSM253245 ZM_12h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
13.1 98.7 GSM253251 ZM_24h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
10.7 98.5 GSM323171 Zm_SG200Dpep1_24hpi_II GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
9.5 98.3 GSM253255 ZM_24h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
9.3 98.2 GSM253252 ZM_24h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
9.3 98.2 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
9.1 98.2 GSM253253 ZM_24h_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
8.9 98.2 GSM323172 Zm_SG200Dpep1_24hpi_III GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
8.7 98.1 GSM253249 ZM_12h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.7 98.1 GSM253244 ZM_12h_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 4e-122 436 Zm.9901.1.A1_at CF633429 Hypothetical protein LOC100191704 - 8e+0 At4g05000 VPS28-2 C.G. S.X.
0.09 2e-13 75 Zm.3153.2.S1_x_at AY103722.1 ferredoxin1 /// ferredoxin5 - 2e+0 At3g22820 allergen-related C.G. S.X.
0.09 2e-13 75 Zm.3153.2.S1_s_at AY103722.1 ferredoxin1 /// ferredoxin5 - 2e+0 At3g22820 allergen-related C.G. S.X.
0.10 6e-13 73 Zm.2.1.A1_at BM347992 Ferredoxin1 - 2e+0 At3g22820 allergen-related C.G. S.X.
0.27 6e-13 73 Zm.15818.1.S1_at M73828.1 ferredoxin5 - 8e-2 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
0.20 1e-11 69 Zm.1630.1.S1_at AW927809 - - 4e-1 At2g34340 unknown protein C.G. S.X.
0.28 1e-11 69 Zm.12616.1.S1_at BU050895 - - 3e-7 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
0.23 1e-8 59 Zm.7282.1.A1_at AB016810.1 ferredoxin2 - 3e-2 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
0.10 4e-5 48 Zm.136.1.S1_at AB001385.1 Fd VI - 3e+1 Atmg00540 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM - - - C.G. S.X.
0.03 7e+0 32 Glycine max PsAffx.CL1336Contig1_at PsAffx.CL1336Contig1 - - 2e+1 At5g13880 unknown protein C.G. S.X.
0.34 1e-76 286 Hordeum vulgare Contig17766_at Contig17766 - - 6e+0 At2g14000 unknown protein C.G. S.X.
0.34 3e-77 289 Oryza sativa Os04g0412200 AK120232.1 - Ferredoxin I 7e-3 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.216892.1.S1_at pmrna31938 hypothetical protein - 4e+0 At1g80700 unknown protein C.G. S.X.
0.31 3e-63 242 Triticum aestivum Ta.8020.1.S1_at CK212799 - - 7e+0 At3g50670 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1622030_at CB343775 hypothetical protein LOC100265343 - 7e-14 At5g65950 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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