Gene omics information

Query gene ID	Zm.3743.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.3743.2.S1_at	AY109746.1	-	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select
0.91	99.0	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.59	76.1	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	S.X.	H.G.	Please select
0.50	65.7	Zm.3743.2.A1_a_at	CF624095	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select
0.47	59.9	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.6	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.2	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.7	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.0	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.0	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1893	Zm.3743.2.A1_at	CF624095	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	C.G.	S.X.	Please select
0.98	0	1893	Zm.3743.2.A1_a_at	CF624095	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	C.G.	S.X.	Please select
0.38	0	815	Zm.3743.1.S1_at	BG841570	-	-	2e-1	At1g47900	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6743.3.S1_at	AY104585.1	hypothetical protein LOC100216801	-	2e-10	At3g02420	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6152.1.S1_at	AI676863	RING zinc finger protein-like /// small basic membrane intrinsic protein1b	-	4e-15	At3g29270	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.16988.4.A1_at	AW498129	-	-	3e-54	At5g62690	TUB2	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.13595.1.A1_at	AY107750.1	phosphatase phospho1	-	2e-6	At1g73010	phosphatase	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.10773.1.A1_at	AY105086.1	hypothetical protein LOC100191227	-	1e+0	At1g73010	phosphatase	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6715.1.S1_a_at	AY104238.1	RING finger and CHY zinc finger domain-containing protein 1	-	2e-5	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g04045	2745976	Expressed protein	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	GmaAffx.20104.1.S1_at	CA800978	-	-	2e-7	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.44	3e-59	228	Hordeum vulgare	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.08	3e-44	180	Oryza sativa	Os03g0246500	AK066916.1	-	Plant protein of unknown function DUF869 familyprotein	6e-10	At1g47900	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-5	50	Populus trichocarpa	Ptp.1912.1.A1_s_at	CK092334	hypothetical protein	-	2e-13	At1g19835	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	3e-61	236	Triticum aestivum	Ta.7290.1.S1_x_at	CA722757	-	-	7e-1	At3g23610	dual specificity protein phosphatase (DsPTP1)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1619817_at	CD005811	-	-	3e-4	At4g13615	four F5 protein-related / 4F5 protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage