CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3731.1.A1_at

Gene name hypothetical protein LOC100194030

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.3731.1.A1_at BM339633 hypothetical protein LOC100194030 - 6e+0 At5g60950 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) S.X. H.G.
0.73 89.9 Zm.9152.1.A1_at BM267500 - - 4e+0 At1g65484 unknown protein S.X. H.G.
0.44 55.7 Zm.17587.1.S1_at CK369775 hypothetical protein LOC100193716 /// hypothetical protein LOC100276274 - 5e+0 At5g67420 LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) S.X. H.G.
0.44 55.7 Zm.886.2.S1_at CK827386 - - 5e-2 At2g39050 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.27 24.6 Zm.12101.2.A1_at AI833552 - - 4e+0 At4g34412 - S.X. H.G.
0.25 21.3 Zm.9854.3.S1_a_at AY109217.1 - - 2e-7 At2g44770 phagocytosis and cell motility protein ELMO1-related S.X. H.G.
0.25 21.3 Zm.1129.1.A1_at BE510577 - - 1e+0 At1g80730 ZFP1 (ZINC-FINGER PROTEIN 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6 96.4 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.9 95.7 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206324 Upper pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 7e-81 299 Zm.12922.1.A1_at CA402545 ATP-dependent RNA helicase dhh1 - 3e-43 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.02 2e-1 36 Zm.428.1.S1_at AF077372.1 hypothetical protein LOC100191335 - 8e-16 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.01 6e-1 34 Zm.410.1.A1_at U17973.1 enolase2 - 2e-97 At2g36530 LOS2 C.G. S.X.
0.02 6e-1 34 Zm.2202.1.A1_at AY105037.1 - - 3e-2 At4g05070 unknown protein C.G. S.X.
0.02 6e-1 34 Zm.19067.1.S1_at AY107493.1 hypothetical protein LOC100279588 - 3e+0 At5g20810 auxin-responsive protein, putative / small auxin up RNA (SAUR_B) C.G. S.X.
0.01 6e-1 34 Zm.15521.1.A1_at CF624536 - - 7e-1 At3g25950 - C.G. S.X.
0.01 3e+0 32 Zm.4995.1.A1_at CA401993 ETHYLENE-INSENSITIVE3-like 1 protein - 1e-2 At3g20770 EIN3 (ETHYLENE-INSENSITIVE3) C.G. S.X.
0.01 3e+0 32 Zm.15172.1.A1_at CF649742 - - 3e+0 At4g03965 protein binding / zinc ion binding C.G. S.X.
0.02 1e+1 30 Zm.9585.1.A1_at BM340807 - - 4e-1 At3g22930 calmodulin, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At5g60950 836216 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) F:unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.9274.1.S1_at CA819534 - - 8e-14 At3g09840 CDC48 (CELL DIVISION CYCLE 48) C.G. S.X.
0.07 5e-8 57 Hordeum vulgare Contig10645_at Contig10645 - - 7e-47 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.08 8e-10 65 Oryza sativa Os02g0641800 AK066504.1 - RNA helicase 3e-143 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.223760.1.S1_at pmrna41922 - - 6e+0 At5g42560 abscisic acid-responsive HVA22 family protein C.G. S.X.
0.06 4e-7 56 Triticum aestivum TaAffx.10805.1.S1_at BQ168937 - - 1e-39 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1607068_at CB345650 hypothetical protein LOC100249313 - 1e-2 At5g48240 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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