Gene omics information

Query gene ID	Zm.3670.2.S1_at
Gene name	phospholipid transfer protein homolog1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.3670.2.S1_at	AY109327.1	phospholipid transfer protein homolog1	-	5e-19	At2g38120	AUX1 (AUXIN RESISTANT 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.8176.1.A1_a_at	AY107848.1	-	-	4e+0	At4g04423	endo-1,3(4)-beta-glucanase	S.X.	H.G.	Please select
0.60	77.8	Zm.7459.1.A1_at	AY105544.1	Hypothetical protein LOC100193143	-	6e-1	At2g44790	UCC2 (UCLACYANIN 2)	S.X.	H.G.	Please select
0.55	71.6	Zm.6021.2.A1_at	AY106638.1	-	-	3e+0	At3g61827	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.7457.1.A1_at	BM078465	cold shock protein-1	-	1e+0	At5g40645	nitrate-responsive NOI protein, putative	S.X.	H.G.	Please select
0.12	5.9	Zm.1328.1.A1_at	BE123333	hypothetical protein LOC100272635	-	2e-6	At2g36290	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	98.7	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.8	98.6	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.5	98.6	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.4	98.4	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.0	98.0	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.5	97.8	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.5	97.8	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.3	97.8	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.2	97.8	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	0	2038	Zm.3670.2.A1_a_at	AY109327.1	glycine-rich protein A3	-	5e-19	At2g38120	AUX1 (AUXIN RESISTANT 1)	C.G.	S.X.	Please select
0.35	0	666	Zm.256.1.A1_at	AI737921	auxin import carrier1	-	2e-17	At2g21050	amino acid permease, putative	C.G.	S.X.	Please select
0.14	8e-133	474	Zm.3670.3.S1_at	CK827983	glycine-rich protein A3	-	4e-5	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.14	9e-68	258	Zm.19.2.S1_x_at	AW574476	phospholipid transfer protein homolog1	-	7e+0	At5g08415	lipoic acid synthase family protein	C.G.	S.X.	Please select
0.11	2e-50	200	Zm.2085.1.S1_s_at	J04176.1	phospholipid transfer protein homolog1	-	7e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.12	4e-45	182	Zm.4055.1.A1_at	AI834130	auxin transporter-like protein 3	-	1e-10	At2g21050	amino acid permease, putative	C.G.	S.X.	Please select
0.07	6e-41	169	Zm.19.1.S1_at	M57249.1	phospholipid transfer protein homolog1	-	5e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.05	6e-41	169	Zm.19.1.A1_a_at	M57249.1	Phospholipid transfer protein homolog1	-	5e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select
0.06	7e-10	65	Zm.714.1.A1_at	U66105.1	phospholipid transfer protein	-	6e+0	At3g48490	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	5e-19	97	Arabidopsis thaliana	At2g38120	818390	AUX1 (AUXIN RESISTANT 1)	Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	7e-19	97	Glycine max	GmaAffx.86192.1.S1_at	BU550323	-	-	7e-50	At5g01240	amino acid permease, putative	C.G.	S.X.	Please select
0.50	0	1400	Hordeum vulgare	Contig8128_at	Contig8128	-	-	4e-31	At5g01240	amino acid permease, putative	C.G.	S.X.	Please select
0.48	0	1528	Oryza sativa	Os01g0856500	AK103981.1	-	AUX1-like protein	1e-46	At5g01240	amino acid permease, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	3e-8	61	Populus trichocarpa	Ptp.114.1.S1_at	AF190880.1	auxin influx carrier component	-	2e-20	At1g77690	LAX3 (LIKE AUX1 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	7e-83	309	Triticum aestivum	Ta.26448.1.S1_at	CD490879	-	-	6e-19	At2g38120	AUX1 (AUXIN RESISTANT 1)	C.G.	S.X.	Please select
0.11	2e-21	103	Vitis vinifera	1614098_at	CF608417	hypothetical protein LOC100267240	-	6e-18	At2g21050	amino acid permease, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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