Gene omics information

Query gene ID	Zm.3657.1.A1_s_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.3657.1.A1_s_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	S.X.	H.G.	Please select
0.88	96.7	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.67	85.8	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	S.X.	H.G.	Please select
0.56	74.4	Zm.2157.7.S1_at	CF019402	ribosomal protein S11	-	1e-38	At4g30800	40S ribosomal protein S11 (RPS11B)	S.X.	H.G.	Please select
0.47	59.9	Zm.7017.1.A1_at	BM072990	hypothetical protein LOC100272933	-	2e+0	At1g31760	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.9	99.5	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
22.9	99.5	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
17.3	99.1	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.5	98.7	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.8	98.6	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.6	98.4	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.0	98.4	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.0	98.2	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.6	97.9	GSM206322	Lower pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.5	97.8	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1110	Zm.3657.1.A1_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.13806.1.S1_at	AY104790.1	gda-1	-	5e-33	At3g27090	-	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.688.1.A1_at	AJ250985.1	outer cell layer3	-	8e-9	At4g00730	ANL2 (ANTHOCYANINLESS 2)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.2707.1.S1_at	BG842199	-	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.2433.1.S1_at	AY103747.1	hypothetical protein LOC100191762	-	3e-14	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	C.G.	S.X.	Please select
0.04	5e-1	34	Zm.1934.1.S1_s_at	AW519956	hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Zm.1934.1.S1_at	AW519956	glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.1917.1.S1_at	AW506675	-	-	6e-4	At1g27690	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.17819.1.A1_at	CO529789	hypothetical protein LOC100216744	-	5e+0	At5g18000	transcriptional factor B3 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g42635	834271	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.psMA011xL18f_at	PsAffx.psMA011xL18f	-	-	5e-1	At2g28400	unknown protein	C.G.	S.X.	Please select
0.22	1e-17	89	Hordeum vulgare	Contig13477_at	Contig13477	-	-	2e-3	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.22	1e-20	101	Oryza sativa	Os02g0758800	AK071537.1	-	Plastocyanin-like domain containing protein	5e-4	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.222154.1.S1_at	pmrna39395	hypothetical protein	-	1e+0	At3g29370	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	8e-8	57	Triticum aestivum	TaAffx.62926.1.S1_at	CD865950	-	-	4e-4	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1609830_at	CF415039	hypothetical protein LOC100260582	-	2e-2	At5g60680	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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