Gene omics information

Query gene ID	Zm.3630.2.S1_at
Gene name	36.4 kDa proline-rich protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.3630.2.S1_at	CO531431	36.4 kDa proline-rich protein	-	3e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.15106.1.A1_at	AI065782	-	-	7e-1	At2g29360	tropinone reductase, putative / tropine dehydrogenase, putative	S.X.	H.G.	Please select
0.36	41.3	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	S.X.	H.G.	Please select
0.35	38.9	Zm.9957.1.A1_at	AI795644	hypothetical protein LOC100274378	-	3e-9	At1g44542	cyclase family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.18096.1.A1_at	CF635434	-	-	4e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	S.X.	H.G.	Please select
0.29	28.1	Zm.5502.1.A1_at	BM378399	hypothetical protein LOC100274214	-	1e-2	At1g14330	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.19	12.8	ZmAffx.76.1.S1_at	AI665214	-	-	3e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	97.9	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.4	97.5	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.9	97.3	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.5	97.1	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.4	97.0	GSM206321	Lower pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-131	468	Zm.3630.1.A1_at	BM380179	-	-	7e+0	At5g15000	-	C.G.	S.X.	Please select
0.04	6e-8	57	Zm.2376.2.S1_x_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.04	6e-8	57	Zm.2376.2.S1_at	AY105236.1	Physical impedance induced protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.04	2e-7	56	Zm.2376.1.A1_a_at	AF001634.1	physical impedance induced protein /// cortical cell-delineating protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.04	2e-7	56	Zm.2376.1.A1_x_at	AF001634.1	physical impedance induced protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.10	9e-7	54	Zm.13129.1.S1_at	AY105001.1	36.4 kDa proline-rich protein	-	2e-1	At4g11430	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	3e-6	52	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	C.G.	S.X.	Please select
0.04	3e-3	42	Zm.728.1.A1_at	BM338202	GR1a protein	-	5e-1	At4g12550	AIR1	C.G.	S.X.	Please select
0.09	3e-3	42	Zm.3427.1.A1_at	AY108411.1	cortical cell-delineating protein	-	9e-2	At4g12545	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+1	30	Arabidopsis thaliana	At5g24770	832546	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	PsAffx.psMY005iB12r_at	PsAffx.psMY005iB12r	-	-	1e+0	At3g01070	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.28	8e-103	373	Hordeum vulgare	Contig4622_s_at	Contig4622	-	-	2e+0	At4g13615	four F5 protein-related / 4F5 protein-related	C.G.	S.X.	Please select
0.22	3e-65	250	Oryza sativa	Os04g0612500	AK062295.1	-	Root-specific protein (RCc2 protein)	4e+0	At5g03010	kelch repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.219534.1.S1_at	pmrna35477	hypothetical protein	-	1e+1	At4g12510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	7e-96	351	Triticum aestivum	Ta.21419.1.S1_x_at	CK163846	-	-	2e+0	At4g13615	four F5 protein-related / 4F5 protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1616983_at	CF207498	hypothetical protein LOC100254117	-	1e+0	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage