Gene omics information

Query gene ID	Zm.3623.1.S1_at
Gene name	hypothetical protein LOC100216808
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.3623.1.S1_at	BG873827	hypothetical protein LOC100216808	-	7e+0	At5g52440	HCF106	S.X.	H.G.	Please select
0.80	94.0	Zm.5008.1.A1_at	AY108557.1	hypothetical protein LOC100275589	-	2e-29	At5g54870	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.1315.1.S1_at	40794996-143	-	-	2e+0	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	S.X.	H.G.	Please select
0.53	69.1		-	-	-	0			S.X.	H.G.	Please select
0.36	41.3	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Zm.11877.1.A1_at	BM381448	-	-	9e-1	At4g39250	ATRL1 (ARABIDOPSIS RAD-LIKE 1)	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.874.1.A1_at	AI770784	-	-	8e-1	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.874.1.S1_at	AI770784	hypothetical protein LOC100277060	-	8e-1	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.9248.1.A1_at	BM266974	hypothetical protein LOC100191194	-	2e+0	At4g25150	acid phosphatase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.19218.1.S1_at	BM080685	circadian clock coupling factor ZGT	-	1e+1	At5g15440	EDL1 (EID1-like 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.13837.1.A1_at	AY104223.1	hypothetical protein LOC100193655	-	6e-11	At2g43770	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.565.1.A1_at	AI714630	-	-	3e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.565.1.S1_at	AI714630	-	-	3e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4386.1.A1_at	BM380831	-	-	5e-3	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At5g52440	835320	HCF106	HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	GmaAffx.92255.1.S1_at	CF807980	-	-	8e-1	At2g04045	-	C.G.	S.X.	Please select
0.29	8e-32	137	Hordeum vulgare	Contig11191_at	Contig11191	-	-	1e+0	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.29	5e-27	123	Oryza sativa	Os09g0520100	AK119678.1	-	Hypothetical protein	2e+0	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+1	32	Populus trichocarpa	PtpAffx.35301.1.S1_at	DN496622	hypothetical protein	-	2e+0	At5g07480	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	963	Triticum aestivum	TaAffx.86077.1.S1_at	CA616931	-	-	4e+0	At5g16160	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1610965_at	BQ792732	-	-	9e-1	At1g05730	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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