Gene omics information

Query gene ID	Zm.3610.1.A1_at
Gene name	hypothetical protein LOC100276901
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.3610.1.A1_at	AW065778	hypothetical protein LOC100276901	-	2e+0	At4g04360	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.361.1.A1_at	AB060130.1	response regulator 8	-	5e-3	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	S.X.	H.G.	Please select
0.60	77.8	Zm.3608.1.A1_at	BG842128	protein lap1	-	6e-4	At3g11330	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.982.4.S1_at	AW787457	-	-	3e+0	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	S.X.	H.G.	Please select
0.46	58.4	Zm.14302.1.A1_at	BG841920	proteasome subunit alpha type 3	-	9e-28	At2g27020	PAG1	S.X.	H.G.	Please select
0.42	51.3	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	S.X.	H.G.	Please select
0.35	38.9	Zm.13228.1.S1_at	CA452580	LHT1	-	5e+0	At4g17585	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Zm.4814.3.A1_a_at	CD440511	glutathione transferase5 /// elongation factor 1-beta	-	2e-10	At1g30230	elongation factor 1-beta / EF-1-beta	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.4814.3.A1_at	CD440511	elongation factor 1-beta	-	2e-10	At1g30230	elongation factor 1-beta / EF-1-beta	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.16783.1.A1_at	BG837332	hypothetical protein LOC100273909	-	6e-7	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.1592.1.A1_at	CD434121	hypothetical protein LOC100191851	-	1e+0	At1g20950	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8955.1.A1_at	AY110626.1	ubiquitin-protein ligase/ zinc ion binding protein	-	4e-2	At3g60300	RWD domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8955.1.S1_at	AY110626.1	-	-	4e-2	At3g60300	RWD domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.7914.1.A1_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.7914.1.A1_a_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.534.1.A1_at	AF276086.1	protein kinase AKINbetagamma-2	-	3e-10	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At4g04360	825756	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-3	44	Glycine max	Gma.14109.1.S1_at	CD415458	-	-	1e+0	At1g05070	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig22160_at	Contig22160	-	-	3e+0	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	C.G.	S.X.	Please select
0.41	3e-62	240	Oryza sativa	Os03g0777500	AK062835.1	-	Conserved hypothetical protein	5e-1	At2g24290	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-10	67	Populus trichocarpa	PtpAffx.134187.2.S1_a_at	CV271991	hypothetical protein	-	1e-1	At2g32580	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	6e-170	597	Triticum aestivum	TaAffx.58146.1.S1_at	CA622071	-	-	1e+1	At5g30495	-	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1611027_at	CB978747	cell wall apoplastic invertase	-	1e-6	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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