Gene omics information

Query gene ID	Zm.361.1.A1_at
Gene name	response regulator 8
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.361.1.A1_at	AB060130.1	response regulator 8	-	5e-3	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	S.X.	H.G.	Please select
0.61	79.5	Zm.3610.1.A1_at	AW065778	hypothetical protein LOC100276901	-	2e+0	At4g04360	unknown protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.982.4.S1_at	AW787457	-	-	3e+0	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.13228.1.S1_at	CA452580	LHT1	-	5e+0	At4g17585	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.14302.1.A1_at	BG841920	proteasome subunit alpha type 3	-	9e-28	At2g27020	PAG1	S.X.	H.G.	Please select
0.46	58.4	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	2248	Zm.5932.1.S1_at	AB071695.1	response regulator 10	-	3e-1	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	C.G.	S.X.	Please select
0.06	2e-6	54	Zm.365.1.A1_at	AB062095.1	response regulator 9	-	3e-4	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.8548.1.A1_at	BM339575	hypothetical protein LOC100279117	-	2e+0	At2g36680	-	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.7147.1.A1_at	AY105550.1	-	-	3e+0	At1g48750	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.4562.1.A1_at	BM332111	-	-	3e-1	At4g16330	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.1737.1.A1_at	AY104832.1	elicitor-responsive protein 3	-	8e+0	At4g17640	CKB2	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.4980.1.A1_at	CF626828	hypothetical protein LOC100276552	-	3e-2	At3g14990	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.16697.1.A1_at	CA399713	-	-	1e-12	At3g10540	3-phosphoinositide-dependent protein kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.10077.1.A1_at	CA399756	glycine-rich protein	-	7e-1	At3g07560	PEX13 (PEROXIN 13)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-3	44	Arabidopsis thaliana	At3g16857	820940	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	38	Glycine max	GmaAffx.54626.1.S1_at	BG789991	-	-	4e-6	At1g67710	ARR11 (RESPONSE REGULATOR 11)	C.G.	S.X.	Please select
0.63	0	704	Hordeum vulgare	Contig2152_at	Contig2152	-	-	5e-6	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	C.G.	S.X.	Please select
0.57	0	734	Oryza sativa	Os03g0224200	AK111864.1	-	Response regulator receiver domain containingprotein	6e-12	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-12	75	Populus trichocarpa	PtpAffx.50541.1.A1_at	CV241742	type-b response regulator /// type-b response regulator	-	1e-11	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	3e-57	224	Triticum aestivum	Ta.14705.2.S1_a_at	CK206029	-	-	5e-1	At1g29870	tRNA synthetase class II (G, H, P and S) family protein	C.G.	S.X.	Please select
0.05	2e-9	63	Vitis vinifera	1610328_at	CD800027	hypothetical protein LOC100263661	-	6e-22	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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