Gene omics information

Query gene ID	Zm.3573.1.A1_at
Gene name	peroxidase 54
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.3376.1.A1_at	AY104431.1	hypothetical protein LOC100273263	-	5e-2	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.6905.1.A1_a_at	AF461814.1	histone1a	-	6e-1	At4g04620	ATG8B (autophagy 8b)	S.X.	H.G.	Please select
0.50	65.7	Zm.5819.1.S1_at	AI649779	-	-	6e-4	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	S.X.	H.G.	Please select
0.50	65.7	Zm.6116.1.A1_at	CK347339	-	-	9e-16	At3g02320	RNA binding / tRNA (guanine-N2-)-methyltransferase	S.X.	H.G.	Please select
0.26	22.7	RPTR-Zm-M57289-1_s_at	RPTR-Zm-M57289-1	-	-	0			S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.0	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.2	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-33	143	Zm.5170.1.S1_at	CF349172	hypothetical protein LOC100216995	-	1e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.06	4e-13	75	Zm.2321.2.A1_a_at	AY103603.1	hypothetical protein LOC100274569	-	1e-5	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.04	4e-13	75	Zm.2321.2.S1_at	AY103603.1	-	-	1e-5	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.04	4e-13	75	Zm.10879.1.S1_at	AY109037.1	peroxidase 24	-	5e-2	At5g58400	peroxidase, putative	C.G.	S.X.	Please select
0.08	1e-12	73	Zm.2505.1.S1_at	BG841722	hypothetical protein LOC100216859	-	4e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.07	6e-12	71	Zm.2136.1.S1_at	AW282383	hypothetical protein LOC100192761	-	5e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.05	2e-11	69	Zm.12716.1.A1_at	AY112283.1	-	-	4e-1	At3g43583	unknown protein	C.G.	S.X.	Please select
0.05	2e-11	69	Zm.12716.1.S1_at	AY112283.1	-	-	4e-1	At3g43583	unknown protein	C.G.	S.X.	Please select
0.06	9e-11	67	Zm.3095.1.S1_at	CO524214	hypothetical protein LOC100192080	-	4e-2	At5g17820	peroxidase 57 (PER57) (P57) (PRXR10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-3	44	Arabidopsis thaliana	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-2	40	Glycine max	Gma.8525.1.S1_s_at	AI966178	peroxidase	-	1e-1	At2g18140	peroxidase, putative	C.G.	S.X.	Please select
0.47	7e-58	224	Hordeum vulgare	Contig1865_at	Contig1865	-	-	2e-4	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.45	3e-72	274	Oryza sativa	Os10g0109300	AK104730.1	-	Peroxidase (EC 1.11.1.7)	5e-5	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-3	46	Populus trichocarpa	PtpAffx.225543.1.S1_s_at	pmrna44967	hypothetical protein	-	8e-9	At1g14550	anionic peroxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	2e-56	220	Triticum aestivum	Ta.2746.1.S1_a_at	CK198851	-	-	1e-2	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.02	2e-7	56	Vitis vinifera	1609321_at	CA817974	hypothetical protein LOC100241916	-	7e-7	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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