Gene omics information

Query gene ID	Zm.3571.1.S1_at
Gene name	Hypothetical protein LOC100193516
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.3571.1.S1_at	BG265645	Hypothetical protein LOC100193516	-	4e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	S.X.	H.G.	Please select
0.73	89.9	Zm.3570.1.A1_at	BG840178	-	-	6e-1	At1g54260	histone H1/H5 family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.3569.1.A1_at	CO518726	hypothetical protein LOC100280101	-	5e+0	At3g55600	-	S.X.	H.G.	Please select
0.67	85.8	Zm.853.1.A1_at	AI395965	hypothetical protein LOC100276013	-	2e-12	At4g01150	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.6703.1.A1_at	CA398710	hypothetical protein LOC100273224	-	1e+0	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	S.X.	H.G.	Please select
0.25	21.3	Zm.3572.1.A1_at	BG873875	harpin-induced protein	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.8	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	38	Zm.17175.1.A1_at	CO526696	hypothetical protein LOC100273291	-	5e-11	At1g65560	allyl alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.04	1e-1	36	ZmAffx.993.1.A1_at	AI855127	AIR12	-	3e+0	Atmg01350	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.9880.1.A1_at	AY107767.1	-	-	1e-7	At2g22300	SR1 (SIGNAL RESPONSIVE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.9880.1.S1_at	AY107767.1	-	-	4e-1	At5g64220	calmodulin-binding protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6103.1.A1_at	CA403951	UBA and UBX domain-containing protein	-	2e-4	At4g04210	PUX4	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2709.1.S1_at	CK371355	hypothetical protein LOC100191894	-	4e-3	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.17812.1.A1_at	CK347988	-	-	6e-5	At1g70560	TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)	C.G.	S.X.	Please select
0.03	6e+0	30	Zm.7707.2.A1_at	BM334255	-	-	5e+0	At4g38930	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g17030	827411	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-3	42	Glycine max	GmaAffx.1738.1.S1_at	BE658810	-	-	5e-29	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	C.G.	S.X.	Please select
0.15	7e-31	133	Hordeum vulgare	Contig17687_at	Contig17687	-	-	5e-4	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	C.G.	S.X.	Please select
0.07	4e-26	119	Oryza sativa	Os01g0867600	AK102226.1	-	Glycosyl transferase, family 28 domain containingprotein	5e-12	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-2	38	Populus trichocarpa	PtpAffx.211173.1.S1_at	pmrna21969	hypothetical protein	-	5e-1	At5g20110	dynein light chain, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	TaAffx.30148.1.S1_at	CA627782	-	-	1e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	C.G.	S.X.	Please select
0.07	3e-1	34	Vitis vinifera	1619549_at	BQ797192	hypothetical protein LOC100250270	-	1e-3	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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