Gene omics information

Query gene ID	Zm.3546.1.S1_at
Gene name	F-box domain containing protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.3546.1.S1_at	CA405247	F-box domain containing protein	-	3e+0	At5g10780	-	S.X.	H.G.	Please select
0.73	89.9	Zm.4975.1.A1_at	AI691922	-	-	9e-1	At3g61900	auxin-responsive family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.5746.1.A1_at	CK986017	-	-	4e-1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.4669.1.S1_at	AI737897	Growth-regulating factor 9-like	-	5e-5	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	S.X.	H.G.	Please select
0.33	36.0	Zm.12834.1.A1_at	AI491262	hypothetical protein LOC100272301	-	1e+1	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	S.X.	H.G.	Please select
0.31	31.6	Zm.10756.1.S1_at	CD975109	-	-	2e+0	At1g58460	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.3657.1.A1_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	Zm.19049.1.A1_at	BG267149	hypothetical protein LOC100274230	-	4e-5	At4g31550	WRKY11	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.14496.1.A1_at	CF014750	sesquiterpene cyclase-like	-	1e+0	At5g46710	zinc-binding family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.14139.1.A1_at	BG266248	xylem cysteine proteinase 2	-	8e-4	At1g20850	XCP2 (xylem cysteine peptidase 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7309.1.S1_s_at	AF384036.1	nucleosome/chromatin assembly factor A /// nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.617.1.A1_at	AF326505.1	tonoplast membrane integral protein ZmTIP4-1	-	4e-2	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5692.1.S1_at	AI629972	hypothetical protein LOC100276119	-	1e-12	At3g12150	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.2254.1.S1_at	AW330764	hypothetical protein LOC100275361	-	3e-1	At1g62840	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.1998.1.S1_at	AW562996	HGA4	-	7e-4	At3g18170	transferase, transferring glycosyl groups	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g10780	830945	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	4e+0	34	Glycine max	PsAffx.CL269Contig1_at	PsAffx.CL269Contig1	-	-	2e+1	At5g63760	IBR domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	Contig19614_at	Contig19614	-	-	2e+0	At5g57570	-	C.G.	S.X.	Please select
0.06	4e-4	48	Oryza sativa	OsAffx.5553.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.54883.1.S1_at	DN493962	-	-	1e+1	At5g42670	agenet domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e+0	34	Triticum aestivum	TaAffx.38200.1.S1_at	BJ245366	-	-	1e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.01	4e+0	32	Vitis vinifera	1622566_at	CD718603	-	-	7e+0	At4g30220	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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