Gene omics information

Query gene ID Zm.3504.1.A1_at
Gene name chloroplast ribonuclease III domain protein
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6785.8Zm.3504.1.A1_atBM073847chloroplast ribonuclease III domain protein-2e-2At4g37510ribonuclease III family proteinS.X.H.G.
0.7490.3Zm.3080.1.A1_atBM382308IAA13 - auxin-responsive Aux/IAA family member-3e-15At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)S.X.H.G.
0.5469.8Zm.12656.1.S1_atCF010887--5e+0At5g07020proline-rich family proteinS.X.H.G.
0.5369.1Zm.4278.1.A1_atAI834022hypothetical protein LOC100279402-1e+1At5g05550transcription factorS.X.H.G.
0.5065.7Zm.6941.1.A1_atCF638044--4e-1At3g46770transcriptional factor B3 family proteinS.X.H.G.
0.4861.3Zm.18115.1.A1_atCN845273ring domain containing protein-5e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.4352.8Zm.3773.1.A1_atAY110209.1Hypothetical protein LOC100193094-4e+0At4g18620-S.X.H.G.
0.4048.5Zm.3885.1.S1_atCK145224Pectin methylesterase1-6e-2At3g06830pectinesterase family proteinS.X.H.G.
0.3844.2Zm.7728.1.A1_atBM079644--3e-3At2g33700protein phosphatase 2C, putative / PP2C, putativeS.X.H.G.
0.3131.6Zm.2922.1.A1_atCO532813--9e+0At4g21865unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.098.4GSM253251ZM_24h_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydis
9.998.3GSM253250ZM_24h_Mock_3inf_IGSE10023Maize gene expression during infection with Ustilago maydis
8.598.1GSM253244ZM_12h_Mock_3inf_IGSE10023Maize gene expression during infection with Ustilago maydis
8.298.0GSM253252ZM_24h_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
8.298.0GSM253247ZM_12h_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
7.897.9GSM253255ZM_24h_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
7.597.8GSM253248ZM_12h_SG200_3inf_IGSE10023Maize gene expression during infection with Ustilago maydis
7.597.8GSM323171Zm_SG200Dpep1_24hpi_IIGSE12892Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
7.397.8GSM253245ZM_12h_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydis
7.397.8GSM323170Zm_SG200Dpep1_24hpi_IGSE12892Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-136Zm.4579.1.S1_atAI737193SWIB/MDM2 domain containing protein-2e-3At3g19080SWIB complex BAF60b domain-containing proteinC.G.S.X.
0.012e+032Zm.6116.1.A1_atCK347339--9e-16At3g02320RNA binding / tRNA (guanine-N2-)-methyltransferaseC.G.S.X.
0.022e+032Zm.19126.1.A1_atCO518579hypothetical protein LOC100273995-8e+0At5g57980RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)C.G.S.X.
0.022e+032Zm.12115.1.A1_atBM379412hypothetical protein LOC100192518-6e-1At5g12910histone H3, putativeC.G.S.X.
0.038e+030ZmAffx.979.1.A1_atAI833962UBP26-8e-1At3g15140exonuclease family proteinC.G.S.X.
0.038e+030ZmAffx.979.1.S1_atAI833962--8e-1At3g15140exonuclease family proteinC.G.S.X.
0.038e+030ZmAffx.701.1.A1_atAI737983hypothetical protein LOC100274433-2e-1At1g03170unknown proteinC.G.S.X.
0.038e+030ZmAffx.701.1.S1_atAI737983--2e-1At1g03170unknown proteinC.G.S.X.
0.028e+030Zm.9696.1.S1_atBM337562--5e+0At4g08039-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-240Arabidopsis thalianaAt4g37510829906ribonuclease III family proteinF:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOFP---C.G.S.X.
0.041e-448Glycine maxGma.1367.1.S1_atBQ297577--2e-19At4g37510ribonuclease III family proteinC.G.S.X.
0.265e-51200Hordeum vulgareContig21442_atContig21442--4e-13At4g37510ribonuclease III family proteinC.G.S.X.
0.134e-48192Oryza sativaOs01g0810100AK071916.1-Ribonuclease III domain containing protein3e-22At4g37510ribonuclease III family proteinC.G.S.X.
0.047e+032Populus trichocarpaPtpAffx.9809.1.A1_atDN488972--2e+0At5g66250kinectin-relatedC.G.S.X.
0.035e+032Triticum aestivumTaAffx.77706.1.S1_atCA743807--4e+0At5g50030invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.046e+030Vitis vinifera1611524_atCF215063hypothetical protein LOC100253364-1e+0At4g25386unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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