Gene omics information

Query gene ID	Zm.3498.1.A1_a_at
Gene name	metallothionein1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	S.X.	H.G.	Please select
0.60	77.8	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	S.X.	H.G.	Please select
0.55	71.6	Zm.13483.1.S1_at	CO528023	Hypothetical protein LOC100192840	-	2e+0	At3g29970	germination protein-related	S.X.	H.G.	Please select
0.33	36.0	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.1079.4.S1_x_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select
0.21	15.5	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.5	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.8	93.5	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.3	91.7	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.3	91.7	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-45	182	Zm.15884.1.A1_at	BM498962	auxin induced protein	-	1e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.13	6e-30	131	Zm.5754.1.A2_at	AY106081.1	-	-	7e-1	At1g07610	MT1C	C.G.	S.X.	Please select
0.13	6e-30	131	Zm.5754.1.A1_at	CF021134	metallothionein-like protein 1	-	7e-1	At1g07610	MT1C	C.G.	S.X.	Please select
0.25	4e-28	125	Zm.10148.1.A1_at	BM382070	-	-	3e-1	At4g18620	-	C.G.	S.X.	Please select
0.16	2e-11	69	Zm.7363.1.A1_at	BM079340	SAUR55 - auxin-responsive SAUR family member	-	6e+0	At4g24950	unknown protein	C.G.	S.X.	Please select
0.05	7e-8	57	Zm.1356.1.A1_at	T25260	hypothetical protein LOC100276909	-	9e-6	At2g40205	60S ribosomal protein L41 (RPL41C)	C.G.	S.X.	Please select
0.14	7e-8	57	Zm.11644.1.A1_at	BM379588	SAUR55 - auxin-responsive SAUR family member	-	2e+1	At3g48298	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.8880.1.S1_at	BM381716	hypothetical protein LOC100193583	-	6e-35	At5g66140	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8559.1.A1_at	BM267276	-	-	6e+0	At3g54110	PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g64690	836590	neurofilament triplet H protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	PsAffx.CL409Contig1_s_at	PsAffx.CL409Contig1	-	-	7e-2	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.16	2e-23	109	Hordeum vulgare	Contig2421_at	Contig2421	-	-	7e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	C.G.	S.X.	Please select
0.20	6e-24	113	Oryza sativa	OsAffx.18028.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.224301.1.S1_at	pmrna42724	hypothetical protein	-	2e+0	At5g63690	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	5e-168	591	Triticum aestivum	Ta.27181.1.S1_at	CA627303	-	-	1e+1	At5g18661	unknown protein	C.G.	S.X.	Please select
0.03	5e-5	48	Vitis vinifera	1607145_s_at	CF205429.1	hypothetical protein LOC100250087	-	5e+0	At3g23290	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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