Gene omics information

Query gene ID	Zm.3450.1.A1_at
Gene name	hypothetical protein LOC100191605
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3450.1.A1_at	AW066723	hypothetical protein LOC100191605	-	4e+0	At2g38695	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.19204.1.S1_at	CA404362	protein phosphatase 2C-like	-	1e-3	At1g09160	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please select
0.91	99.0	Zm.19203.1.S1_at	CO520849	hypothetical protein LOC100193957	-	1e-5	At3g07220	transcriptional activator, putative	S.X.	H.G.	Please select
0.80	94.0	Zm.6692.1.S1_at	CA409229	hypothetical protein LOC100193785	-	3e-24	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.7332.1.S1_at	CF013037	kinesin-like protein9	-	2e-24	At3g16630	KINESIN-13A	S.X.	H.G.	Please select
0.53	69.1	Zm.7334.1.S1_at	CD975420	kinesin-like protein16	-	2e-25	At5g41310	kinesin motor protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	8e-77	286	Zm.6595.1.A1_at	AI629743	Hypothetical protein LOC100191605	-	4e-1	At1g25375	metallo-beta-lactamase family protein	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.17832.1.S1_at	AB112937.1	plastidic general dicarboxylate transporter	-	7e-8	At5g64290	DIT2.1 (DICARBOXYLATE TRANSPORT 2.1)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6388.1.A1_at	CD001224	-	-	8e-3	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6388.1.S1_at	AI691656	-	-	8e-3	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.706.1.A1_at	AY108440.1	-	-	5e-2	At1g44835	YbaK/prolyl-tRNA synthetase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4508.1.A1_at	CF013098	hypothetical protein LOC100192829	-	2e-20	At2g05990	MOD1 (MOSAIC DEATH 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4026.1.A1_at	CA404521	-	-	8e+0	At5g53340	galactosyltransferase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13800.1.A1_at	AY104884.1	hypothetical protein LOC100273643	-	3e-18	At1g17350	auxin-induced-related / indole-3-acetic acid induced-related	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.8989.1.A1_at	CF627051	hypothetical protein LOC100191298	-	8e-40	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At2g38695	2745586	unknown protein	F:unknown;P:unknown;C:membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	GmaAffx.2059.1.S1_at	AW350234	-	-	9e-1	At5g15140	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.15	4e-54	210	Hordeum vulgare	Contig12795_s_at	Contig12795	-	-	3e-4	At1g25375	metallo-beta-lactamase family protein	C.G.	S.X.	Please select
0.15	1e-44	180	Oryza sativa	Os01g0133500	AK101232.1	-	Beta-lactamase-like domain containing protein	2e-4	At1g25375	metallo-beta-lactamase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.214390.1.S1_at	pmrna28002	hypothetical protein	-	2e+0	At5g60290	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	2e-48	192	Triticum aestivum	TaAffx.115997.1.S1_at	AJ610848	-	-	4e-2	At1g25375	metallo-beta-lactamase family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1606695_at	CF403712	hypothetical protein LOC100247470	-	1e+0	At4g23770	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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