Gene omics information

Query gene ID	Zm.3436.1.A1_at
Gene name	hypothetical protein LOC100217002
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3436.1.A1_at	AI964659	hypothetical protein LOC100217002	-	1e-20	At3g54190	-	S.X.	H.G.	Please select
0.67	85.8	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.3866.1.S1_at	CK370021	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	S.X.	H.G.	Please select
0.67	85.8	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.61	79.5	Zm.9097.1.A1_at	BM266610	-	-	1e+0	At2g17640	ATSERAT3	S.X.	H.G.	Please select
0.50	65.7	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.8	93.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.8	93.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-3	44	Zm.2790.1.A1_at	AW067260	hypothetical protein LOC100274410	-	1e-6	At3g54190	-	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.6611.1.A1_at	AW076483	hypothetical protein LOC100192688	-	1e-18	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.537.2.S1_at	CF054696	hypothetical protein LOC100273405	-	1e-46	At4g02930	elongation factor Tu, putative / EF-Tu, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4342.1.S1_s_at	AI795683	-	-	3e-1	At1g17080	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.365.1.A1_at	AB062095.1	response regulator 9	-	3e-4	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.2666.1.A1_at	AW066791	-	-	1e-5	At4g01780	XH/XS domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.16269.1.S1_at	AI711955	-	-	9e-2	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.7914.2.A1_at	CF634583	GATA transcription factor 25	-	1e-10	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.7023.2.S1_a_at	AI734540	surfactant protein B containing protein	-	9e-1	At2g27250	CLV3 (CLAVATA3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-20	101	Arabidopsis thaliana	At3g54190	824586	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-3	44	Glycine max	GmaAffx.42903.1.S1_at	CA801699	-	-	8e-29	At2g38630	-	C.G.	S.X.	Please select
0.53	2e-107	389	Hordeum vulgare	Contig14966_at	Contig14966	-	-	7e-23	At3g54190	-	C.G.	S.X.	Please select
0.37	5e-99	363	Oryza sativa	Os12g0498300	CR280249	-	WD40-like domain containing protein	2e-22	At3g54190	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-33	145	Populus trichocarpa	PtpAffx.215580.1.S1_at	pmrna29857	hypothetical protein	-	7e-69	At3g54190	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	2e-93	343	Triticum aestivum	Ta.7270.1.S1_at	BT009258.1	-	-	5e-24	At2g38630	-	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1617218_x_at	CF202349.1	-	-	6e+0	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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