Gene omics information

Query gene ID	Zm.343.1.S1_at
Gene name	outer cell layer2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.343.1.S1_at	CB603836	outer cell layer2	-	6e-3	At4g00730	ANL2 (ANTHOCYANINLESS 2)	S.X.	H.G.	Please select
0.55	71.6	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	S.X.	H.G.	Please select
0.55	71.6	Zm.6049.1.A1_at	AY103705.1	-	-	1e-1	At5g02400	PLL2	S.X.	H.G.	Please select
0.50	65.7	Zm.749.1.S1_at	AY291061.1	photosystem II subunit PsbS1	-	8e-7	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	S.X.	H.G.	Please select
0.47	59.9	Zm.17497.1.A1_at	BG266429	hypothetical protein LOC100273930	-	3e+0	Atmg00140	-	S.X.	H.G.	Please select
0.44	55.7	Zm.12838.1.A1_at	BG837201	-	-	1e+0	At1g26440	ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)	S.X.	H.G.	Please select
0.43	52.8	Zm.15576.1.A1_a_at	CK827910	-	-	3e-1	At5g01860	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.41	49.7	Zm.6049.3.A1_a_at	AI734480	phosphatidylinositol transporter/ transporter	-	3e-3	At1g76640	calmodulin-related protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.9	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.8	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.1	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	6e-44	178	Zm.224.1.S1_at	Y17898.1	outer cell layer1	-	1e-7	At4g00730	ANL2 (ANTHOCYANINLESS 2)	C.G.	S.X.	Please select
0.06	3e-15	83	Zm.345.1.S1_at	AJ250987.1	OCL5 protein	-	4e-10	At1g05230	HDG2 (HOMEODOMAIN GLABROUS 2)	C.G.	S.X.	Please select
0.14	1e-14	81	Zm.688.1.A1_at	AJ250985.1	outer cell layer3	-	8e-9	At4g00730	ANL2 (ANTHOCYANINLESS 2)	C.G.	S.X.	Please select
0.04	3e-12	73	Zm.344.1.A1_at	AI834592	OCL4 protein	-	2e-6	At5g46880	HB-7 (HOMEOBOX-7)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.4627.1.S1_a_at	AY501430.1	rolled leaf1 /// rolled leaf 2	-	1e-22	At5g60690	REV (REVOLUTA)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.12915.1.S1_at	CD445795	-	-	5e-6	At2g46550	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.700.2.A1_a_at	BM378538	hypothetical protein LOC100191408 /// heat shock 70 kDa protein	-	4e-51	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.5872.1.A1_at	CF037565	-	-	8e-14	At1g73720	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.305.1.A1_at	U67422.1	crinkly4	-	4e-29	At3g59420	ACR4 (ARABIDOPSIS CRINKLY4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-3	44	Arabidopsis thaliana	At4g00730	828022	ANL2 (ANTHOCYANINLESS 2)	Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	9e-12	73	Glycine max	Gma.13007.1.A1_at	CD390562	-	-	6e-6	At3g61150	HDG1 (HOMEODOMAIN GLABROUS 1)	C.G.	S.X.	Please select
0.17	5e-11	69	Hordeum vulgare	Contig19040_at	Contig19040	-	-	2e+0	At4g12470	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.40	4e-64	248	Oryza sativa	Os04g0569100	AB101647.1	-	Helix-turn-helix motif, lambda-like repressordomain containing protein	2e-6	At3g61150	HDG1 (HOMEODOMAIN GLABROUS 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-10	67	Populus trichocarpa	PtpAffx.120252.1.S1_s_at	CX171411	hypothetical protein	-	6e-6	At4g00730	ANL2 (ANTHOCYANINLESS 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	4e-10	67	Triticum aestivum	TaAffx.84260.1.S1_at	CA641304	-	-	2e+0	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.05	4e-4	46	Vitis vinifera	1614235_at	CF512911	-	-	5e-10	At3g61150	HDG1 (HOMEODOMAIN GLABROUS 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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