Gene omics information

Query gene ID	Zm.3412.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.3412.1.S1_at	CA405066	-	-	1e-8	At3g42950	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.168.1.A1_at	X52384.1	protein kinase1	-	2e-5	At5g02290	NAK	S.X.	H.G.	Please select
0.32	33.4	Zm.820.2.A1_x_at	BQ538933	hypothetical protein LOC100216625	-	4e+0	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	S.X.	H.G.	Please select
0.25	21.3	Zm.10313.1.S1_at	AY082396.1	knotted1-interacting protein	-	2e-7	At2g16400	BLH7 (bell1-like homeodomain 7)	S.X.	H.G.	Please select
0.22	16.9	Zm.4954.1.A1_at	AI586618	ischemia/reperfusion inducible protein	-	2e+0	At5g64400	-	S.X.	H.G.	Please select
0.06	2.3	Zm.6045.10.A1_a_at	AI714790	guanine nucleotide-binding protein beta subunit-like protein	-	1e-10	At1g18080	ATARCA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Zm.4227.1.A1_at	CF625229	TBC domain containing protein	-	3e-12	At5g54780	RAB GTPase activator	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.9508.1.A1_at	BM351117	-	-	9e-3	At5g28040	transcription regulator	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.4445.1.A1_at	AW497446	hypothetical protein LOC100194391	-	7e+0	At5g18250	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.3157.4.A1_at	AI734519	-	-	5e-1	At1g09220	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.13605.1.S1_at	CO522133	serine--glyoxylate aminotransferase	-	1e-14	At2g13360	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	C.G.	S.X.	Please select
0.01	2e+1	30	Zm.8989.1.A1_at	CF627051	hypothetical protein LOC100191298	-	8e-40	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please select
0.04	2e+1	30	Zm.7001.1.A1_at	CO526482	hypothetical protein LOC100273574	-	1e-18	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.01	2e+1	30	Zm.5946.1.A1_at	CF633416	CID11	-	7e-10	At3g14450	CID9 (CTC-Interacting Domain 9)	C.G.	S.X.	Please select
0.01	2e+1	30	Zm.5645.1.A1_at	AI629785	-	-	2e-6	At5g24710	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-8	61	Arabidopsis thaliana	At3g42950	823351	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	4e-6	54	Glycine max	GmaAffx.78411.1.S1_at	BI424461	-	-	1e-9	At1g19170	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Hordeum vulgare	HVSMEf0011E06r2_s_at	HVSMEf0011E06r2	-	-	2e-3	At1g76680	OPR1	C.G.	S.X.	Please select
0.52	0	944	Oryza sativa	Os09g0439400	AK121407.1	-	Glycoside hydrolase, family 28 protein	2e-11	At3g42950	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-3	46	Populus trichocarpa	PtpAffx.157587.1.S1_at	CX657486	hypothetical protein	-	7e-56	At3g42950	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	5e-11	69	Triticum aestivum	Ta.9167.1.S1_at	CD935966	-	-	4e-2	At3g42950	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.03	8e-4	44	Vitis vinifera	1608756_at	BQ798436	hypothetical protein LOC100255362	-	2e-13	At4g23500	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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