Gene omics information

Query gene ID	Zm.3407.1.S1_at
Gene name	SC3 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.3407.1.S1_at	BM080146	SC3 protein	-	3e-6	At1g32050	secretory carrier membrane protein (SCAMP) family protein	S.X.	H.G.	Please select
0.75	90.8	Zm.9117.1.A1_at	CF636944	hypothetical protein LOC100274722	-	4e-1	At1g71865	unknown protein	S.X.	H.G.	Please select
0.69	86.5	ZmAffx.188.1.S1_at	AI668391	Hypothetical protein LOC100216777	-	3e-6	At1g13690	ATE1	S.X.	H.G.	Please select
0.61	79.5	Zm.10557.1.A1_a_at	CK347884	hypothetical protein LOC100280344 /// agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	S.X.	H.G.	Please select
0.61	79.5	Zm.6751.1.A1_at	BG873976	hypothetical protein LOC100274772	-	4e-5	At3g62580	-	S.X.	H.G.	Please select
0.52	67.3	ZmAffx.1199.1.S1_at	BE057023	-	-	5e-2	At3g48610	phosphoesterase family protein	S.X.	H.G.	Please select
0.52	67.3	Zm.9335.1.A1_at	BM268136	hypothetical protein LOC100273605	-	2e-2	At2g40580	protein kinase family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.10148.1.A1_at	BM382070	-	-	3e-1	At4g18620	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.932.1.A1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.19338.1.S1_at	CO520504	-	-	4e-2	At1g30870	cationic peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	98.4	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.2	98.4	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.5	97.8	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.6	97.6	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.4	97.0	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM206320	Lower pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206314	Upper pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206296	Lower pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Zm.13717.1.S1_at	AY106421.1	SC3 protein	-	9e-16	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.4184.1.A1_at	CA404216	26S proteasome non-ATPase regulatory subunit 14	-	7e-38	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.3508.1.S1_at	BQ619526	SC3 protein	-	3e-11	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.5952.1.A1_at	AI665919	-	-	5e-5	At5g57970	methyladenine glycosylase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.8715.1.A1_at	BM339325	hypothetical protein LOC100277171	-	1e+0	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7027.1.A1_at	CA404895	-	-	2e-10	At2g19160	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6894.1.A1_at	BM380620	-	-	7e-47	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3184.1.A1_at	AY105651.1	gibberellin 20-oxidase	-	5e-2	At5g07200	YAP169	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.2391.1.A1_at	CK826632	SC3 protein	-	2e+0	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-6	54	Arabidopsis thaliana	At1g32050	840097	secretory carrier membrane protein (SCAMP) family protein	F:transmembrane transporter activity;P:protein transport;C:mitochondrion, plasma membrane;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-10	67	Glycine max	Gma.623.1.S1_at	AW278073	-	-	3e-10	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.55	0	688	Hordeum vulgare	Contig12788_at	Contig12788	-	-	1e-5	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.50	8e-113	408	Oryza sativa	Os04g0595800	AK058642.1	-	Secretory carrier membrane protein	2e-16	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	9e-7	56	Populus trichocarpa	PtpAffx.18957.2.S1_s_at	CV236205	hypothetical protein	-	4e-36	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	5e-94	345	Triticum aestivum	TaAffx.65920.1.S1_at	CA593462	-	-	6e+0	At4g09080	TOC75-IV	C.G.	S.X.	Please select
0.05	3e-3	42	Vitis vinifera	1617997_at	CB339576	hypothetical protein LOC100262642	-	8e-5	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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