CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3400.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 61.3 Zm.3400.1.S1_at CN845120 - - 2e-9 At5g17170 ENH1 (enhancer of sos3-1) S.X. H.G.
0.25 21.3 Zm.12546.2.S1_a_at AI770557 - - 3e+0 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) S.X. H.G.
0.16 9.4 Zm.5003.2.A1_at CO518270 - - 9e-2 At4g25570 ACYB-2 S.X. H.G.
0.15 8.6 Zm.11962.1.A1_at BM382210 - - 2e-1 At1g25260 acidic ribosomal protein P0-related S.X. H.G.
0.08 3.4 Zm.2119.2.A1_at CA404565 hypothetical protein LOC100193866 - 9e-5 At3g23890 TOPII (TOPOISOMERASE II) S.X. H.G.
0.06 2.3 Zm.4037.1.A1_at X67561.1 Zmhox1a homeobox protein - 3e-5 At3g19510 HAT3.1 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 97.4 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2 97.4 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
6.1 97.4 GSM253262 ZM_4d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.8 97.2 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8 97.2 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
5.7 97.2 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM253264 ZM_4d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
5.5 97.1 GSM253276 ZM_8d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 40 Zm.4876.1.S1_at CF631731 - - 9e-26 At3g22200 POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) C.G. S.X.
0.01 6e-2 38 Zm.19204.1.S1_at CA404362 protein phosphatase 2C-like - 1e-3 At1g09160 protein phosphatase 2C-related / PP2C-related C.G. S.X.
0.01 2e-1 36 Zm.8045.1.S1_at BM072741 Hypothetical protein LOC100192850 - 9e-10 At3g14930 HEME1 C.G. S.X.
0.01 2e-1 36 Zm.3136.1.A1_at CF625170 hypothetical protein LOC100192461 - 9e-66 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.02 2e-1 36 Zm.17357.1.S1_at CK370769 - - 5e+0 At1g29195 unknown protein C.G. S.X.
0.02 9e-1 34 Zm.5757.1.A1_at AI637260 laccase 1 - 5e-4 At5g01040 LAC8 (laccase 8) C.G. S.X.
0.01 9e-1 34 Zm.5821.1.A1_at AW091512 - - 3e+0 At3g14990 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative C.G. S.X.
0.02 9e-1 34 Zm.4747.1.S1_a_at AY105845.1 small nuclear ribonucleoprotein-associated protein B - 3e-9 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative C.G. S.X.
0.02 9e-1 34 Zm.3393.1.A1_at CF634160 - - 1e+0 At5g15530 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-9 63 Arabidopsis thaliana At5g17170 831581 ENH1 (enhancer of sos3-1) F:protein binding, electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPO - - - C.G. S.X.
0.23 6e-23 109 Glycine max Gma.13129.1.S1_at CD404336 - - 2e-62 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.49 2e-79 295 Hordeum vulgare Contig4014_at Contig4014 - - 5e-10 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.49 3e-87 323 Oryza sativa Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.19 5e-14 79 Populus trichocarpa Ptp.7433.1.S1_at CV267931 - - 1e-48 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.38 1e-81 303 Triticum aestivum Ta.5590.2.S1_at CK214552 - - 7e-7 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.10 1e-17 89 Vitis vinifera 1610210_at CA812095 hypothetical protein LOC100263114 - 8e-28 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage