Gene omics information

Query gene ID	Zm.34.2.A1_at
Gene name	nuclear cap-binding protein subunit 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	S.X.	H.G.	Please select
0.73	89.9	Zm.2856.1.A1_at	AW076433	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	-	9e-34	At2g35620	FEI2 (FEI 2)	S.X.	H.G.	Please select
0.73	89.9	Zm.5048.9.S1_at	AI600956	hypothetical protein LOC100191158	-	1e-5	At5g45410	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.18251.1.A1_at	CN845321	-	-	5e-3	At5g66080	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.11965.1.A1_at	BM382230	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1449	Zm.34.2.S1_at	AY103769.1	-	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	C.G.	S.X.	Please select
0.11	7e-16	83	Zm.10443.1.S1_at	CA826758	-	-	1e+1	At5g52730	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.08	1e-14	79	Zm.2265.1.S1_at	AW330882	-	-	3e+0	At3g49720	unknown protein	C.G.	S.X.	Please select
0.08	1e-14	79	Zm.2265.1.S1_x_at	AW330882	-	-	3e+0	At3g49720	unknown protein	C.G.	S.X.	Please select
0.02	2e-10	65	Zm.34.1.A2_a_at	AY109329.1	Hypothetical protein LOC100192755	-	9e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	2e-10	65	Zm.34.1.A1_x_at	AF371261.1	opaque2 modifier	-	9e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.05	7e-7	54	Zm.3186.1.A1_at	CK827152	-	-	4e-4	At5g16070	chaperonin, putative	C.G.	S.X.	Please select
0.05	7e-7	54	Zm.3186.1.S1_a_at	CK827152	hypothetical protein LOC100279311	-	4e-4	At5g16070	chaperonin, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.17667.1.A1_at	CK985924	-	-	1e-1	At3g20070	TTN9 (TITAN9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-13	77	Arabidopsis thaliana	At5g44200	834443	CBP20 (CAP-BINDING PROTEIN 20)	Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	4e-17	89	Glycine max	GmaAffx.79776.1.S1_at	BM521808	-	-	2e-32	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	C.G.	S.X.	Please select
0.39	2e-127	454	Hordeum vulgare	Contig8433_at	Contig8433	-	-	1e-23	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	C.G.	S.X.	Please select
0.39	4e-132	472	Oryza sativa	Os02g0612300	AY278997.1	-	Nuclear cap binding protein subunit 2 (20 kDanuclear cap binding protein) (NCBP 20 kDa subunit)(CBP20) (NCBP interacting protein 1) (NIP1)	1e-20	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	2e-12	73	Populus trichocarpa	PtpAffx.133616.1.A1_at	CV269250	hypothetical protein	-	1e-37	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	8e-138	490	Triticum aestivum	Ta.2512.1.S1_at	BJ241027	-	-	4e-27	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1617980_at	CB346475	-	-	8e-1	At5g66800	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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