Gene omics information

Query gene ID	Zm.3396.1.S1_at
Gene name	mtN19-like protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.3396.1.S1_at	AY107588.1	mtN19-like protein	-	2e+1	At5g51830	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.18484.1.S1_at	CO530863	hypothetical protein LOC100273226	-	3e+0	At2g45695	-	S.X.	H.G.	Please select
0.50	65.7	Zm.10793.1.A1_at	CF635868	-	-	5e-9	At4g04770	ATABC1 (ATP BINDING CASSETTE PROTEIN 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.15818.1.S1_at	M73828.1	ferredoxin5	-	8e-2	At1g10960	ATFD1 (FERREDOXIN 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.17181.1.S1_at	CK145306	-	-	7e-17	At1g64660	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	S.X.	H.G.	Please select
0.25	21.3	Zm.6739.1.A1_at	AI987340	-	-	1e+0	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.0	99.2	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
11.8	98.6	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.2	98.4	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.0	98.4	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM253267	ZM_4d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Zm.283.1.S1_at	AY254104.1	benzoxazinless1	-	5e-2	At4g01220	-	C.G.	S.X.	Please select
0.01	4e-2	38	Zm.1194.1.S1_at	CA403262	fasciclin-like arabinogalactan protein 10	-	2e-1	At5g52930	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.7152.1.A1_at	AY110483.1	hypothetical protein LOC100216962	-	7e-5	At5g47500	pectinesterase family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3554.1.S1_at	X57627.1	exopolygalacturonase1	-	3e+0	At4g32370	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.3019.1.A1_at	CK368018	pollen-specific arabinogalacta protein BAN102	-	1e+0	At2g41905	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.8765.1.A1_at	BM349229	-	-	5e+0	At2g07738	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.8468.1.A1_at	BM074266	gibberellin receptor GID1L2	-	6e+0	At3g45480	zinc ion binding	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.8468.1.A1_s_at	BM074266	-	-	6e+0	At3g45480	zinc ion binding	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6532.6.A1_at	CK370644	hypothetical protein LOC100272908 /// abscisic stress ripening protein 2 /// abscisic stress ripening protein 2	-	1e-1	At1g62060	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At5g51830	835258	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	36	Glycine max	PsAffx.psMA010xL10f_s_at	PsAffx.psMA010xL10f	-	-	5e+0	At5g22040	-	C.G.	S.X.	Please select
0.11	8e-7	54	Hordeum vulgare	HV14I04u_s_at	HV14I04u	-	-	1e+1	At5g63090	LOB (LATERAL ORGAN BOUNDARIES)	C.G.	S.X.	Please select
0.12	4e-12	73	Oryza sativa	Os08g0538600	AK067831.1	-	-	9e-1	At5g61820	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.10695.1.A1_at	CV255466	hypothetical protein	-	3e-8	At5g61820	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	4e-109	395	Triticum aestivum	Ta.17279.1.S1_at	CA619299	-	-	7e+0	At4g16442	integral membrane family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1612019_at	BQ800502	-	-	3e-1	At2g33470	GLTP1 (glycolipid transfer protein 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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