CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3376.1.A1_at

Gene name hypothetical protein LOC100273263

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.3376.1.A1_at AY104431.1 hypothetical protein LOC100273263 - 5e-2 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) S.X. H.G.
0.61 79.5 Zm.3573.1.A1_at CF629925 peroxidase 54 - 3e-3 At5g06720 peroxidase, putative S.X. H.G.
0.53 69.1 Zm.5819.1.S1_at AI649779 - - 6e-4 At1g29900 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) S.X. H.G.
0.48 61.3 Zm.6877.1.A1_at AW216051 hypothetical protein LOC100193287 - 1e-11 At5g61460 MIM (hypersensitive to MMS, irradiation and MMC) S.X. H.G.
0.40 48.5 Zm.6905.1.A1_a_at AF461814.1 histone1a - 6e-1 At4g04620 ATG8B (autophagy 8b) S.X. H.G.
0.32 33.4 Zm.16848.2.A1_at CD437503 hypothetical protein LOC100193258 - 1e-7 At3g22230 60S ribosomal protein L27 (RPL27B) S.X. H.G.
0.30 29.8 Zm.530.1.S1_at AF297046.1 homocysteine S-methyltransferase-3 - 2e-10 At3g25900 HMT-1 S.X. H.G.
0.29 28.1 RPTR-Zm-M57289-1_s_at RPTR-Zm-M57289-1 - - 0 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.2 98.2 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.9 97.3 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.7 97.2 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.6 97.1 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.4 97.0 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.3 96.9 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.2 96.9 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.1 96.8 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.9 96.7 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.8 96.6 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 5e-68 258 Zm.7998.1.A1_at AY106482.1 hypothetical protein LOC100273454 - 3e+0 At4g11680 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.24 2e-58 226 Zm.17627.1.A1_at CK369147 hypothetical protein LOC100272868 - 3e-1 At4g37990 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) C.G. S.X.
0.18 7e-21 101 Zm.2631.1.S1_at AY107698.1 hypothetical protein LOC100191885 - 5e-5 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
0.16 1e-16 87 Zm.1567.1.S1_at BG840795 - - 2e+0 At2g40085 unknown protein C.G. S.X.
0.12 2e-11 69 Zm.64.1.A1_at AY109876.1 cinnamyl alcohol dehydrogenase - 6e-8 At3g19450 ATCAD4 C.G. S.X.
0.02 9e-5 48 ZmAffx.616.1.A1_at AI715044 - - 3e+0 At2g22970 serine carboxypeptidase S10 family protein C.G. S.X.
0.02 9e-5 48 ZmAffx.616.1.S1_at AI715044 - - 3e+0 At2g22970 serine carboxypeptidase S10 family protein C.G. S.X.
0.01 2e-2 40 Zm.12127.1.A1_at CO519754 - - 4e+0 At1g62333 unknown protein C.G. S.X.
0.01 3e-1 36 Zm.859.1.A1_at CF060267 hypothetical protein LOC100191283 - 8e-1 At4g28420 aminotransferase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-2 40 Arabidopsis thaliana At2g21730 816710 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.C608000003_at PsAffx.C608000003 - - 5e+0 At1g31070 UDP-N-acetylglucosamine pyrophosphorylase-related C.G. S.X.
0.51 1e-124 446 Hordeum vulgare Contig4260_at Contig4260 - - 5e-2 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) C.G. S.X.
0.48 0 700 Oryza sativa Os.6862.2.A1_at - - - 0 C.G. S.X.
0.03 4e-3 44 Populus trichocarpa Ptp.7649.1.S1_at BI125474 cinnamyl alcohol dehydrogenase-like protein - 5e-6 At4g37970 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) C.G. S.X.
0.57 0 739 Triticum aestivum Ta.27726.1.S1_at CD880591 - - 6e-1 At4g37990 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) C.G. S.X.
0.03 1e-3 44 Vitis vinifera 1607417_at CF512464 hypothetical protein LOC100245522 - 1e-4 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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