CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3374.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 81.1 Zm.3374.1.S1_at BM380917 - - 3e+0 At1g21864 - S.X. H.G.
0.67 85.8 Zm.18096.1.A1_at CF635434 - - 4e+0 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) S.X. H.G.
0.46 58.4 Zm.3630.2.S1_at CO531431 36.4 kDa proline-rich protein - 3e+1 At5g24770 VSP2 (VEGETATIVE STORAGE PROTEIN 2) S.X. H.G.
0.08 3.4 Zm.3972.2.A1_at CF623465 - - 5e-66 At5g43010 RPT4A S.X. H.G.
0.04 1.5 ZmAffx.221.1.A1_at AI670229 - - 8e-1 At5g64670 ribosomal protein L15 family protein S.X. H.G.
0.03 1.1 ZmAffx.281.1.S1_at AI670409 - - 3e+0 At5g46795 MSP2 (microspore-specific promoter 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.5 99.3 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
18.9 99.2 GSM206323 Left pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
16.6 99.1 GSM290553 WS1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
16.2 99.0 GSM206311 Left pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.8 98.7 GSM206317 Right pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.2 97.8 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.9 97.7 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
6.3 97.4 GSM375791 Deep-sowing 10d treatment GA3, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.7 97.2 GSM375795 Deep-sowing 10d treatment Control, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.7 97.2 GSM258534 DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 2 GSE10243 Profiling expression changes caused by a segmental aneuploid in maize
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-43 176 Zm.16476.1.A1_at CO527154 lipid binding protein - 2e+1 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
0.16 2e-33 143 Zm.1754.1.A1_a_at CF624874 lipid binding protein - 5e+0 At3g03750 SET domain-containing protein C.G. S.X.
0.09 1e-18 93 Zm.4529.2.S1_at BM333157 - - 8e+0 Atmg00050 - C.G. S.X.
0.06 1e-15 83 Zm.4529.1.A1_a_at CF624627 lipid binding protein - 4e-3 At5g40490 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 3e-7 56 Zm.4699.1.S1_at CK787284 hypothetical protein LOC100273144 - 3e+0 At5g63480 unknown protein C.G. S.X.
0.02 1e-6 54 Zm.3073.1.A1_at AY111277.1 nucleoside diphosphate kinase 2 - 5e-29 At5g63310 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) C.G. S.X.
0.02 5e-6 52 Zm.8336.1.S2_at AB061270.1 NAS1 protein - 4e+0 At2g44360 unknown protein C.G. S.X.
0.02 5e-6 52 Zm.8336.1.S1_at AB061270.1 NAS1 protein - 4e+0 At2g44360 unknown protein C.G. S.X.
0.02 5e-6 52 Zm.8336.1.S1_x_at AB061270.1 NAS1 protein - 4e+0 At2g44360 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At1g21864 5007712 - Encodes a Plant thionin family protein - - - C.G. S.X.
0.06 6e-2 40 Glycine max Gma.1243.1.S1_at AW311027 - - 2e-5 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.21 8e-76 284 Hordeum vulgare Contig5475_at Contig5475 - - 5e+0 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.25 6e-92 339 Oryza sativa Os.12266.1.S1_at - - - 0 C.G. S.X.
0.05 1e-2 42 Populus trichocarpa Ptp.7218.1.S1_at CV273365 hypothetical protein - 2e-5 At3g53980 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.26 3e-77 289 Triticum aestivum Ta.28117.2.S1_x_at CA605300 - - 4e+0 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 3e-6 52 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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