Gene omics information

Query gene ID Zm.335.1.S1_a_at
Gene name Zea mays MADS16
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4251.3Zm.335.1.S1_a_atBM078498Zea mays MADS16-3e-2At3g57390AGL18S.X.H.G.
0.6785.8Zm.6968.1.A1_atAI065873apurinic endonuclease-redox protein-2e+0At3g077503' exoribonuclease family domain 1-containing proteinS.X.H.G.
0.6381.1Zm.8751.1.A1_atBM348137--1e+0At3g05700-S.X.H.G.
0.6179.5Zm.3204.1.S1_x_atBM953397hypothetical protein LOC100278241-3e-1At1g70250receptor serine/threonine kinase, putativeS.X.H.G.
0.6077.8Zm.17740.2.A1_a_atBI430966hypothetical protein LOC100277215-2e+0At1g77200AP2 domain-containing transcription factor TINY, putativeS.X.H.G.
0.5674.4Zm.4805.1.A1_atCD441355heat shock protein 70 kDa-0At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)S.X.H.G.
0.5369.1Zm.10383.3.A1_atAW562601--9e-20At3g05060SAR DNA-binding protein, putativeS.X.H.G.
0.4352.8Zm.18416.1.A1_atCO524449hypothetical protein LOC100193203-3e-1At3g27900unknown proteinS.X.H.G.
0.4251.3Zm.5976.2.S1_atBG265782--3e+0At5g4008060S ribosomal protein-relatedS.X.H.G.
0.4048.5Zm.16306.1.A1_atAY111557.1hypothetical protein LOC100273693-2e+0At1g07140SIRANBPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.499.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.599.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.099.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.799.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.398.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.498.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.698.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.498.5GSM202297Mo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.498.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.498.5GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.196e-79293Zm.336.1.S1_atAW144867ER6 protein /// Zea mays MADS29-2e-1At1g09740ethylene-responsive protein, putativeC.G.S.X.
0.261e-55216Zm.336.2.A1_a_atAW055920Zea mays MADS29-2e+0At4g37940AGL21C.G.S.X.
0.151e-39163Zm.487.1.S1_a_atAF181479.1silky1-8e-3At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
0.111e-27123Zm.3907.1.S1_atL81162.2AGAMOUS-like protein /// M2 protein-3e-15At4g18960AG (AGAMOUS)C.G.S.X.
0.115e-27121Zm.14826.1.A1_atAJ430637.1m23 protein-2e-16At4g18960AG (AGAMOUS)C.G.S.X.
0.115e-27121Zm.14826.1.S1_atAJ430637.1m23 protein-2e-16At2g42830SHP2 (SHATTERPROOF 2)C.G.S.X.
0.137e-26117Zm.9560.1.A1_atBM382073m17 protein-3e-2At1g77080-C.G.S.X.
0.103e-25115Zm.578.1.S1_atAF112150.1MADS box protein 3-3e-3At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.101e-24113Zm.133.1.S1_atL18924.1homologue of Arabidopsis gene AGAMOUS-5e-8At2g42830SHP2 (SHATTERPROOF 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-240Arabidopsis thalianaAt3g57390824906AGL18encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.---C.G.S.X.
0.092e-448Glycine maxGmaAffx.41949.3.S1_atBM732175--1e-8At5g20240PI (PISTILLATA)C.G.S.X.
0.128e-2097Hordeum vulgareContig3831_atContig3831--3e-15At4g18960AG (AGAMOUS)C.G.S.X.
0.500686Oryza sativaOs01g0883100AY551924.1-PISTILLATA-like MADS box protein1e-1At5g20240PI (PISTILLATA)C.G.S.X.
0.078e-1375Populus trichocarpaPtpAffx.205555.1.S1_s_atpmrna10986MIKC mads-box transcription factor /// hypothetical protein-2e-11At5g20240PI (PISTILLATA)C.G.S.X.
0.524e-156551Triticum aestivumTa.4889.1.S1_atAB107992.1PISTILLATA-like MADS box protein-6e-4At5g20240PI (PISTILLATA)C.G.S.X.
0.064e-548Vitis vinifera1621836_atAF373604.1MADS-box protein 5-2e-9At4g09960STK (SEEDSTICK)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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