Gene omics information

Query gene ID	Zm.3303.2.A1_at
Gene name	lipoxygenase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.3303.2.A1_at	CO527646	lipoxygenase	-	3e+0	At3g22400	LOX5	S.X.	H.G.	Please select
0.77	92.1	Zm.4283.2.S1_at	AY109824.1	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.7598.1.A1_at	CF629653	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please select
0.57	75.1	Zm.155.2.S1_at	AY109498.1	-	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.55	71.6	Zm.5305.1.A1_at	CK370425	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	S.X.	H.G.	Please select
0.53	69.1	Zm.1011.1.S1_at	BM073180	hypothetical protein LOC100192700	-	3e+0	At1g35242	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.1	98.9	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
11.2	98.5	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
10.2	98.4	GSM253260	ZM_2d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
9.1	98.2	GSM253253	ZM_24h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.2	97.8	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.6	97.6	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.4	97.5	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.4	97.5	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.4	97.5	GSM206321	Lower pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	0	906	Zm.3303.1.A1_x_at	AF271894.1	lipoxygenase	-	6e-6	At3g22400	LOX5	C.G.	S.X.	Please select
0.39	0	906	Zm.3303.1.A1_at	AF271894.1	lipoxygenase	-	6e-6	At3g22400	LOX5	C.G.	S.X.	Please select
0.29	2e-113	408	Zm.445.1.S1_at	AF329371.1	Lipoxygenase	-	6e-3	At3g22400	LOX5	C.G.	S.X.	Please select
0.19	1e-28	127	Zm.5319.1.S1_a_at	AY103567.1	lipoxygenase	-	4e-7	At3g22400	LOX5	C.G.	S.X.	Please select
0.31	6e-24	111	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	C.G.	S.X.	Please select
0.04	3e-4	46	ZmAffx.1005.1.A1_at	AI881362	Lipoxygenase	-	3e+0	At1g04130	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.04	3e-4	46	ZmAffx.1005.1.S1_at	AI881362	lipoxygenase	-	3e+0	At1g04130	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.16891.1.A1_a_at	CF627370	proteasome subunit alpha type 5	-	6e-63	At3g14290	PAE2	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.14487.1.S1_at	AY104322.1	lipoxygenase	-	7e-3	At3g45140	LOX2 (LIPOXYGENASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	34	Arabidopsis thaliana	At3g22400	821808	LOX5	F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.93591.1.S1_s_at	CF809316	lipoxygenase-9	-	4e-1	At3g22400	LOX5	C.G.	S.X.	Please select
0.36	1e-99	363	Hordeum vulgare	Contig1736_at	Contig1736	lipoxygenase 1 protein	-	1e+0	At3g22400	LOX5	C.G.	S.X.	Please select
0.34	6e-86	319	Oryza sativa	Os03g0738600	AK073529.1	-	Lipoxygenase L-2 (EC 1.13.11.12)	2e+0	At1g55020	LOX1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	36	Populus trichocarpa	PtpAffx.211477.1.S1_s_at	pmrna22499	hypothetical protein	-	3e-9	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	1e-128	460	Triticum aestivum	Ta.22828.2.S1_at	CD934725	-	-	2e+0	At5g28070	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1614236_at	CB918490	-	-	6e-12	At1g29370	kinase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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