CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.3303.1.A1_at

Gene name lipoxygenase

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.3303.1.A1_at AF271894.1 lipoxygenase - 6e-6 At3g22400 LOX5 S.X. H.G.
0.71 88.2 Zm.7121.2.A1_x_at AF457960.1 - - 5e-6 At3g12120 FAD2 (FATTY ACID DESATURASE 2) S.X. H.G.
0.44 55.7 Zm.4078.1.A1_at BM079694 protein kinase APK1A - 6e-16 At3g01300 protein kinase, putative S.X. H.G.
0.40 48.5 Zm.7122.1.A1_at AY111472.1 - - 2e+0 At1g35580 CINV1 (cytosolic invertase 1) S.X. H.G.
0.36 41.3 Zm.606.1.A1_at AF326493.1 plasma membrane intrinsic protein2 - 1e-37 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) S.X. H.G.
0.25 21.3 Zm.16834.1.A1_at AY109979.1 - - 4e-1 At1g64370 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.9 99.4 GSM253254 ZM_24h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
18.5 99.2 GSM253253 ZM_24h_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
14.6 98.9 GSM253255 ZM_24h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
10.8 98.5 GSM290554 WS2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
8.8 98.1 GSM385710 Deep-sowing 10d treatment TIBA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
8.5 98.1 GSM290553 WS1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
7.1 97.7 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.0 97.3 GSM375796 Deep-sowing 10d treatment GA3, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.7 97.2 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.5 97.1 GSM253260 ZM_2d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 2093 Zm.3303.1.A1_x_at AF271894.1 lipoxygenase - 6e-6 At3g22400 LOX5 C.G. S.X.
0.39 0 906 Zm.3303.2.A1_at CO527646 lipoxygenase - 3e+0 At3g22400 LOX5 C.G. S.X.
0.63 8e-170 597 Zm.445.1.S1_at AF329371.1 Lipoxygenase - 6e-3 At3g22400 LOX5 C.G. S.X.
0.16 2e-65 250 Zm.445.2.A1_at AF457968.1 Lipoxygenase - 4e+0 At5g47600 heat shock protein-related C.G. S.X.
0.16 2e-65 250 Zm.445.2.S1_a_at AF457968.1 lipoxygenase - 4e+0 At5g47600 heat shock protein-related C.G. S.X.
0.28 1e-36 155 Zm.5319.1.S1_a_at AY103567.1 lipoxygenase - 4e-7 At3g22400 LOX5 C.G. S.X.
0.19 2e-32 141 Zm.4596.1.A1_at CF636987 lipoxygenase - 4e-1 At5g17670 hydrolase, acting on ester bonds C.G. S.X.
0.06 4e-5 50 Zm.14487.1.S1_at AY104322.1 lipoxygenase - 7e-3 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.01 2e-1 38 Zm.1768.1.A1_at AW433380 vesicle-associated membrane protein 714 - 4e-5 At5g22360 ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-6 54 Arabidopsis thaliana At3g22400 821808 LOX5 F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO - - - C.G. S.X.
0.01 5e-1 38 Glycine max Gma.1.1.A1_at U36442.1 lipoxygenase - 5e-1 At5g20180 ribosomal protein L36 family protein C.G. S.X.
0.62 4e-147 521 Hordeum vulgare Contig1736_at Contig1736 lipoxygenase 1 protein - 1e+0 At3g22400 LOX5 C.G. S.X.
0.60 0 660 Oryza sativa Os03g0738600 AK073529.1 - Lipoxygenase L-2 (EC 1.13.11.12) 2e+0 At1g55020 LOX1 C.G. S.X.
0.04 5e-1 38 Populus trichocarpa Ptp.6239.1.S1_at DN490661 hypothetical protein - 4e-8 At1g55020 LOX1 C.G. S.X.
0.41 4e-118 426 Triticum aestivum Ta.28171.1.S1_at BT008992.1 - - 4e+0 At3g22400 LOX5 C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1620215_at BM437406 - - 1e-1 At5g66830 F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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