Gene omics information

Query gene ID	Zm.3302.1.A1_at
Gene name	hypothetical protein LOC100276576
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.3302.1.A1_at	AY110608.1	hypothetical protein LOC100276576	-	5e-1	At5g04150	BHLH101	S.X.	H.G.	Please select
0.47	59.9	Zm.6377.2.A1_a_at	AI691626	growth-regulating factor 10-like	-	1e+0	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	S.X.	H.G.	Please select
0.43	52.8	Zm.7671.1.A1_at	BM073122	hypothetical protein LOC100272470	-	8e-2	At4g00232	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.7364.1.A1_at	BM078096	-	-	2e+0	At5g25750	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13185.1.A1_at	AY104045.1	-	-	1e-22	At3g13060	-	S.X.	H.G.	Please select
0.29	28.1	Zm.7908.1.A1_at	BM080382	-	-	1e+0	At3g10020	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.17395.1.A1_at	CK347732	hypothetical protein LOC100191730	-	5e+0	At2g22920	serine carboxypeptidase S10 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	42	Zm.1482.2.A1_at	CO531725	hypothetical protein LOC100279242	-	7e+0	At5g17280	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.8052.1.S1_at	CK827803	-	-	2e-2	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.7736.1.S1_at	AF019146.1	maize insect resistance2	-	4e-3	At2g34080	cysteine proteinase, putative	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.7081.1.S1_x_at	BM078729	hypothetical protein LOC100193634 /// ribosomal protein L32 homolog32	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.7081.1.S1_at	BM078729	Hypothetical protein LOC100193634	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.17509.1.S1_s_at	CK394687	low temperature viability protein	-	2e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.17509.1.S1_at	CK394687	low temperature viability protein	-	2e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.7914.1.A1_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.7914.1.A1_a_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At5g04150	830293	BHLH101	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-2	40	Glycine max	HgAffx.15981.1.S1_at	CB280375	-	-	4e+0	At4g22160	unknown protein	C.G.	S.X.	Please select
0.26	2e-23	109	Hordeum vulgare	Contig7975_at	Contig7975	-	-	1e-1	At4g35600	CONNEXIN 32	C.G.	S.X.	Please select
0.15	3e-22	107	Oryza sativa	Os08g0169600	AK067305.1	-	-	6e+0	At4g14910	imidazoleglycerol-phosphate dehydratase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.89304.1.A1_at	CV229973	global transcription factor group	-	1e-3	At5g46030	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	1e-23	111	Triticum aestivum	Ta.9204.1.S1_s_at	BQ170138	-	-	9e+0	At4g30670	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1617861_at	CB340880	hypothetical protein LOC100258495	-	3e-5	At2g37510	RNA-binding protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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